Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00963 ATGGGAAGAGCTCCTTGTTGTGCCAAAGTTGGATTGCACAAGGGTCCATGGACTACTAAAGAAGATGCATTGCTTACAAAGTATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTAAGACCAGATATTAAAAGAGGTAACATAAGCCCTGATGAAGATGATCTCATAATAAGATTACATTCACTTCTCGGAAATCGATGGTCACTTATAGCCGGAAGATTACCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAACACGCATCTTGTTAAAAAGATTCAAAGAAATCAACAAACATGTGATGTTTCATCAGATCATGATGATGAACAAGAACAAACCAAGAAAAAGAAGAAAAACAACACCAACAAGAAGAGAAAGAAAAATGACAAGAAAAAAGGTGCTAAGAATAATAATCATCAAGAGGAAGAGAGAATTAAAGTTTTTTCACCAAAACCCATTAGGATAAAGGCTATAAATTTACCAAGAACAGATAGTGGTAATTCATTTACTTTTGAATCAAATTCATCATTTGGTAGTCAAGAAAAAGAAAGAACAGAAGAACAAATGGAAAACAACAACAACAACGTTGTTTGTGAGGTTGGTGAGAAAAATGAAAATGACGGTTTTGGGTTGTCACGTGATGACTATGACTTAGTCAACGTTTGCAGACTAGATAATGAATACGAATCATATTTTGACACGTGTGGTGTTGGTGGTGATAATGGAACATTAGAGAGACTCTATGATGAATACTTGCAACTTTTGAATATGGAAGATTGCAATTACCAGTTTGATTCTTCTTTTGCTCAATCCTTCTTTGATTCAAACAATGATATTATTTGTTAA 915 0.3454 MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNISPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLVKKIQRNQQTCDVSSDHDDEQEQTKKKKKNNTNKKRKKNDKKKGAKNNNHQEEERIKVFSPKPIRIKAINLPRTDSGNSFTFESNSSFGSQEKERTEEQMENNNNNVVCEVGEKNENDGFGLSRDDYDLVNVCRLDNEYESYFDTCGVGGDNGTLERLYDEYLQLLNMEDCNYQFDSSFAQSFFDSNNDIIC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00963 304 MobiDBLite consensus disorder prediction 118 169 - -
Trre15g00963 304 MobiDBLite consensus disorder prediction 124 139 - -
Trre15g00963 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre15g00963 304 CDD SANT 16 61 IPR001005 -
Trre15g00963 304 SMART sant 66 114 IPR001005 -
Trre15g00963 304 SMART sant 13 63 IPR001005 -
Trre15g00963 304 Gene3D - 14 66 - -
Trre15g00963 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre15g00963 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre15g00963 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre15g00963 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre15g00963 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre15g00963 304 Coils Coil 147 167 - -
Trre15g00963 304 FunFam Myb transcription factor 11 67 - -
Trre15g00963 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Trre15g00963 304 MobiDBLite consensus disorder prediction 140 156 - -
Trre15g00963 304 CDD SANT 71 112 IPR001005 -
Trre15g00963 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre15g00963 304 Gene3D - 71 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00963 Trre-Chr15 7505615 7506886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00963 1 116 MYB Transcription Factor Family AT5G49330 75.000 6.61e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g00963 Myb_DNA-binding 9.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00963 K09422 - gmx:100101857 335.495