Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00962 ATGGTGCAGTCTTGTAGACAAACAAGGTTTCAACTCATGGAAGGGTTAGCTCCTAATTCATGTCCAAGACAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTACAACAACTATAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGATCAAGAAAGAACAAGAAAGTAATCAATCCTTCATCAACAAAAATTCCTGACCTAAATCCACCAACCCTAGTTCAAGTCTCATCTCTTTCTAATTCTCAAAACCCTAAAATGCAAGGAGGACAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATCATAATCATCATGGTATGTCTTCATCATATGTTGAGATGCATAATAATAATAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCTAGCATGGCATCTAGAGGCTTAAATCCTTATGCTAATAATAATAATACTTTGATGCCAAACTCAAATACTATTTATCCAACTGGATTCCCCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATCATATGATCATGTTCAAGTCCAAGAAGGTGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGATGTTAATATTAATAAGCAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGAACAAGGAAATTCAACTGGATATTGGAATGGAATGATTGGTGAAGGATCATGGTAA 837 0.3596 MVQSCRQTRFQLMEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVINPSSTKIPDLNPPTLVQVSSLSNSQNPKMQGGQDLNLAFPSMENYHHHNHHGMSSSYVEMHNNNNNESSSSALDLLRSSMASRGLNPYANNNNTLMPNSNTIYPTGFPMQEVKPSLGFSIDGINGNRSSYDHVQVQEGGGGGRLLFPFGDVNINKQLSTSGVEVEHNKEQGNSTGYWNGMIGEGSW 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00962 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 178 IPR045174 GO:0003700|GO:0006355
Trre15g00962 278 MobiDBLite consensus disorder prediction 89 105 - -
Trre15g00962 278 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Trre15g00962 278 MobiDBLite consensus disorder prediction 80 105 - -
Trre15g00962 278 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Trre15g00962 278 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00962 Trre-Chr15 7472641 7476726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00962 28 278 C2C2-Dof Transcription Factor Family AT3G61850 49.110 1.01e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre15g00962 zf-Dof 4.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00962 - - gmx:778110 345.895