Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00960 ATGATTTCTGGTTCTGTTTTAGCATTGCATCCTTCTGACAATGCTTTCAGAACAAGGGATTCTCCTGATTTTGAGGAGGACTTTGTAGAGAAAGATCCAACCGGCCGGTACATAAGGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGACTGTTTATAGGGCATTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTTAGGATCGATGGCCTCTTACACTCAGTAGATGATCTAGCAAAATTATATTCTGAAGTTCATCTATTGAAGTCTTTGAATCATGAAAATATCATTAAGTTCTACGACTCCTGGATTGATGATACGCAGAAAACCGTTAACATGATCACTGAACTCTTCACATCTGGAAACTTAAGACAGTACCGTAAGAAGCATAAATATGTTGAAATGAAAGCCATAAAAGGTTGGGCAAGACAGATTCTTCAAGGCTTAGTATATCTTCACGGTCACAGGCCGCCTATTATACACCGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCACGGAGAAGTTAAAATAGGTGATCTCGGTTTGGCAATCGTCATGCAGCAGCCAACTGCTCGGAGCGTCATTGGGACGCCCGAGTTTATGGCTCCAGAATTATATGAAGAGGAGTACAATGAACTTGTTGACATCTATTCTTTTGGAATGTCAATATTGGAGATGGTTACTCTTGAATATCCCTATAATGAATGCACCAACCCAGCTCAAATATTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTTAATAAGGTGAGTGACCCTCAAATTAAGGAGTTTATTGAGAAATGCCTGGTTCCAGCATCTGAGAGATTGTCTGCAGAGGAACTTCTTAAAGACCCATTTCTACAAATTGAGAGTCAAAAGGATCCATTACTGTCTCCTATTAAAACTCGAAGAGCTACAGATACGCCAAGGTCTGGATCTATGGACATGGATGCTGACTACAAACATTTTTCCGGGAGTATCTATGCTGAAAGCAGCCAGGGAAGTCCACATTGTCCTATTTTTGAAGTCCAAAGGACCAATAAGAACAACGAGTTTAGGTTAAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCGGATACATGTGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATACAGATACTGCAGATTCCGTGGCCTCAGAGATGGTTGAACATTTGGAGCTTGCAGATCATGATGTGGCTTTCATAGCTGAGCTTATTGATTACTTGATAATGAAGCTTCTTCCTTGGTGGAAACCTTCGCCTGATCATAACTCAACTGGAGGAATAAGTCGTTGTAGTGGTTCTACAAATGTCGATAGCCAAAGCTTAACCGCATCCCCTTGGAGTTCTATCATAACAAGTGTTCCCTCAGAAACAGTTAGTGGTCAAGACGTCTTTTCCGGGTTTAATACAATTCCTAGAGATGGTTTTGAGACACCTGGAAAAAGCTATTTTTACAAAAATGCTATTTTCAAGGGTGCCTTTGATTCTCCTCCTTGTTTGGTTAACTCAGAAGATCGATATTCACGAGGATCCGGGGCTTCTGAGATAGCTGTTGATGATGTTTCAATGAAAACTGCCAATTGTCATGATTCCAAATTTCTCGGTGTTGGATATTTTAAATGCCTAACAAGGTCGATAACGGGGCTTGAAGTTGGTGATGCCTATTTCGAAGATTGTAAATTGCAGGCAGCAGATTTCAATATTAGAGGAAGCACTGTGAATTCAGAACTATCAAATGTTGTGAGCTTATCAAGTAGCTGTTGTTCTGTGTCTTCAACCGAAAAGGATATTGATCTTGAGCTAAAAAATGAACTCGAGGCAATTGAGTTGCAATATCAGCATTGGATTGAGGAACTCACTAGAATGAAATTGGAGGCATTGGAAGCCACCCGAAGGAGATGGACAGCCAAGAAGAAAGTAGCAATTCATTGA 1989 0.4042 MISGSVLALHPSDNAFRTRDSPDFEEDFVEKDPTGRYIRYNEILGRGAFKTVYRAFDEVDGIEVAWNQVRIDGLLHSVDDLAKLYSEVHLLKSLNHENIIKFYDSWIDDTQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILQGLVYLHGHRPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMSILEMVTLEYPYNECTNPAQIFKKVTSGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQIESQKDPLLSPIKTRRATDTPRSGSMDMDADYKHFSGSIYAESSQGSPHCPIFEVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDTDTADSVASEMVEHLELADHDVAFIAELIDYLIMKLLPWWKPSPDHNSTGGISRCSGSTNVDSQSLTASPWSSIITSVPSETVSGQDVFSGFNTIPRDGFETPGKSYFYKNAIFKGAFDSPPCLVNSEDRYSRGSGASEIAVDDVSMKTANCHDSKFLGVGYFKCLTRSITGLEVGDAYFEDCKLQAADFNIRGSTVNSELSNVVSLSSSCCSVSSTEKDIDLELKNELEAIELQYQHWIEELTRMKLEALEATRRRWTAKKKVAIH 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00960 662 ProSiteProfiles Protein kinase domain profile. 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00960 662 SMART serkin_6 38 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00960 662 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 373 428 IPR024678 GO:0004674|GO:0005524
Trre15g00960 662 FunFam probable serine/threonine-protein kinase WNK9 121 300 - -
Trre15g00960 662 Gene3D - 370 444 - -
Trre15g00960 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 543 - -
Trre15g00960 662 FunFam Probable serine/threonine-protein kinase WNK1 23 119 - -
Trre15g00960 662 SUPERFAMILY Protein kinase-like (PK-like) 32 296 IPR011009 -
Trre15g00960 662 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Trre15g00960 662 CDD STKc_WNK 36 295 - -
Trre15g00960 662 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Trre15g00960 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trre15g00960 662 Coils Coil 624 644 - -
Trre15g00960 662 Pfam Protein kinase domain 41 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00960 Trre-Chr15 7452738 7457005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00960 25 431 MAP Kinase Kinase Kinase AT1G64630 62.864 1.84e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre15g00960 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00960 K08867 - gmx:100272197 926.006