Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00956 ATGAGGCCTGTTTTCGCTGGGAATTTGGAGTACGATACTCGTCAATCAGACCTTGAACGCTTGTTCTCAAAGTATGGCAGGATTGAACGCGTTGACATGAAATCTGGATTTGCTTTTGTCTATTATGAAGATGAGCGTGATGCTGAAGAAGCAATTCGTGCGCTTGACAATGTTCCATTTGGTTATGATAAGCGACGATTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGTTCAAAGGCAAACCAGAAGCCCACAAAAACTCTATTTGTGATCAACTTTGACCCAATTCGCACAAGAGTTAGTGATATAGAGAGACACTTCAAACCTTATGGGGAGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCCCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTTGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGGGTTGACAATTATGGAAGTCCCAGAAGAGGAGGGGGTCTTGCTAGGTCTCCCAGTCCAGGTTATCACAGGAGACCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGTGTATGATAGGTATAGTGGTCCGGACAGGCGGAGGAGTCCTGATTACGGCAGGAACAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGAATACGGAAGATATCGCAGTCGTTCACCTGTACGAAGGTCGAGAACATAG 747 0.4659 MRPVFAGNLEYDTRQSDLERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNVPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGELHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYGSPRRGGGLARSPSPGYHRRPSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00956 248 SMART rrm1_1 3 70 IPR000504 GO:0003723
Trre15g00956 248 SMART rrm1_1 92 158 IPR000504 GO:0003723
Trre15g00956 248 MobiDBLite consensus disorder prediction 167 248 - -
Trre15g00956 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 236 - -
Trre15g00956 248 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Trre15g00956 248 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Trre15g00956 248 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Trre15g00956 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Trre15g00956 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 58 IPR000504 GO:0003723
Trre15g00956 248 MobiDBLite consensus disorder prediction 205 240 - -
Trre15g00956 248 Gene3D - 83 171 IPR012677 -
Trre15g00956 248 Gene3D - 1 82 IPR012677 -
Trre15g00956 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Trre15g00956 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00956 Trre-Chr15 7440890 7443047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00956 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.370 2.82e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00956 K12893 - gmx:100797709 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00956 15 7440890 7443047 Trre15g00956 15 7440890 7443047 ECH