Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00955 ATGAAAGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTGGAGCAGTGTTTGAAAGAGTACAATGTGAAACTAGACAAGGGTTTGAGTTCTTCTGAGGTTCAGAAGCGGCGCGAAAAGTATGGTTGGAATGAGTTAGCAAAAGAAAAGGGAAAGCCATTATGGAAACTAGTGTTAGAACAATTTGATGACATGTTGGTGAAGATACTTTTGGTTGCCGCCTTTGTATCGTTTCTTTTAGCATACATTGAAGGAAGTGAATCGGGCGAGTCTGGATTTGAAGCCTATGTAGAGCCACTCGTGATCATTTTGATTTTAGTCCTTAACGCAATTGTCGGAGTATGGCAAGAGAACAATGCCGAAAAGGCTCTTGAAGCACTGAAAGAGTTGCAATGCGAGTCTATTAAAGTGTTAAGGGATGGATATTTTGTTCCCGACTTGCCTGCGCGAGAGCTTGTTCCTGGCGACATTGTTGAGTTACGTGTTGGAGATAAAGTCCCTGCTGACATGAGAATTGCAGCATTGAAAACCTCAACATTGAGAGCGGAACAAAGCTCGTTAACCGGAGAAGCAATGCCTGTTCTCAAAGGAATAAATCCTATTTTCTTGGATGATTGTGAATTGCAGGCCAAAGAAAATATGGTATTTGCAGGAACAACTGTTGTCAATGGAAGCTGTCTTTGCATTGTTATTACCACAGCAATGAACACCGAAATCGGAAAGATACAAAAGCAAATACACGAAGCTTCGTTGGAGGAGAGCGATACTCCGTTGAAGAAGAAATTGGACGAATTTGGCGGAAGGCTTACAACTTCTATTGGAATAGTTTGTCTAGTTGTTTGGATTATAAACTACAAAAATTTCATTTCTTGGGATGTTGTTGATGGATGGCCTTCAAACATTCAATTTTCTTTTAAAAAATGCACTTACTATTTCAAAATCGCCGTTGCTCTTGCTGTGGCTGCAATTCCAGAAGGTCTTCCAGCGGTTATCACAACATGTTTAGCACTTGGTACAAGAAAAATGGCACAAAAGAATGCAATAGTGAGAAAGCTTCCAAGTGTTGAAACTTTAGGATGTACCACTGTGATTTGTTCAGATAAAACCGGTACGCTAACTACGAATCAAATGTCTGCGATGGAGTTTTTTACTTTGGGAGGGAAAACCACTGCTTCTAGAGTCCTTAGAGTTGAAGGGACAACTTATGATCCAAAAGATGGAGGCATTGTTGATTGGACTTGCTATAACATGGATGCTAACTTGTTAGCCATGGCAGAAATATGTGCGGTTTGTAATGATGCCGGGGTTTATTTTGATGGTCGCTTATTTCGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGGTTTCCAGATATCAAGTCAAGGAACAAAACTCGCGATGCGCAAGTTGCGACAAACAACACAACGGATTGCAACACTATGAAACTAGGCTGTTGTGAGTGGTGGAATAGAAGATCCAAAAGGGTAGCTACGTTAGAGTTTGATCGCGTTAGGAAGTCAATGAGTGTTATTGTTCGCGAACCAGATGGGCAAAATCGGCTTCTGGTCAAGGGTGCTGTTGAGAGTTTATTGGAGCGAAGTTCGTATGTGCAACTTGCTGATGGATCTCTTGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCATGAGATGAGTTCGAAGGGATTACGTTGCTTAGGTTTGGCATGTAAAGATGAGTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTATTCATCGATTGAAAGCGATTTAGTTTTTGTTGGTGTTGTTGGTTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGCAAGCTGGTATTCGAGTTATGGTAATAACCGGAGATAATAAGTCAACAGCGGAGGCTATTTGTAAGGAAATCAAATTGTTCTCTAGAGATGAGGATCTTACAGGTCAAAGTTTGACAGGTAAGGAATTCATGTCTCTTCCTCATTCAGAACAAGTTAAATTATTGTTGAGAGAAGGAGGCAAGGTTTTCTCTCGAGCCGAGCCTAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTAGCAGATGACAATTTTAGTACTATTGTTTCAGCTATCGCTGAGGGTCGCGCTATTTATAATAACATGAAAGCATTTATAAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACAGCTGCTTTGGGGATACCTGAATGTATGATACCAGTGCAACTTTTGTGGGTGAATTTGGTCACCGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATTATGCAGAAGCCACCTCGAAAAAGTGACGATGCTCTTATAAGTACTTGGGTTCTTTTCCGTTACCTAGTAATTGGTTCCTATGTCGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATGAATCTTGTTAGTGATGGACACACAGTTGTAGAATTGTCACAACTTCTCAACTGGAGAGAATGTCCTTCATGGTCTAATTTCACCGTTTCTTCATTTGACGCTGGTGGCGGTCGCTTGATCACGTTTTCAAACCCCTGTGACTATTTTTCAGTTGGAAAAGTCAAGGCTATGACTCTTTCTCTCTCTGTCTTGGTGGCAATTGAGATGTTTAATTCTTTGAATGCTCTCTCAGAAGAGAATAGCTTGAGGACATTACCACCTTGGAGAAACCCTTGGCTTTTGGTAGCAATGACAATATCTTTAGGACTACATTGTCTCATACTTTACATTCCATTCCTCTCTGAGGTGTTTGGTGTTGCTCCACTAAGTTTAAAGGAGTGGTTTTTGGTGATTCTGATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTTGTGAGGAGTCAAAGGAGGAATACAAAACAGAAACAAGCATGA 3165 0.4085 MKVPMEEKPFPAWSWSVEQCLKEYNVKLDKGLSSSEVQKRREKYGWNELAKEKGKPLWKLVLEQFDDMLVKILLVAAFVSFLLAYIEGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESIKVLRDGYFVPDLPARELVPGDIVELRVGDKVPADMRIAALKTSTLRAEQSSLTGEAMPVLKGINPIFLDDCELQAKENMVFAGTTVVNGSCLCIVITTAMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGGRLTTSIGIVCLVVWIINYKNFISWDVVDGWPSNIQFSFKKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSAMEFFTLGGKTTASRVLRVEGTTYDPKDGGIVDWTCYNMDANLLAMAEICAVCNDAGVYFDGRLFRATGLPTEAALKVLVEKMGFPDIKSRNKTRDAQVATNNTTDCNTMKLGCCEWWNRRSKRVATLEFDRVRKSMSVIVREPDGQNRLLVKGAVESLLERSSYVQLADGSLVPIDDQCRELLLQRLHEMSSKGLRCLGLACKDELGEFSDYYADTHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICKEIKLFSRDEDLTGQSLTGKEFMSLPHSEQVKLLLREGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRAIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISTWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGMNLVSDGHTVVELSQLLNWRECPSWSNFTVSSFDAGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMTISLGLHCLILYIPFLSEVFGVAPLSLKEWFLVILISAPVILIDEILKLVVRSQRRNTKQKQA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00955 1054 FunFam Calcium-transporting P-type ATPase, putative 624 775 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 754 766 - -
Trre15g00955 1054 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Trre15g00955 1054 Gene3D - 30 252 - -
Trre15g00955 1054 Gene3D - 63 1043 - -
Trre15g00955 1054 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 794 1048 - -
Trre15g00955 1054 PRINTS Sodium/potassium-transporting ATPase signature 983 1007 - -
Trre15g00955 1054 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Trre15g00955 1054 NCBIfam HAD-IC family P-type ATPase 703 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g00955 1054 NCBIfam HAD-IC family P-type ATPase 305 393 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g00955 1054 SUPERFAMILY Calcium ATPase, transduction domain A 139 248 IPR008250 -
Trre15g00955 1054 Gene3D - 378 629 IPR023299 GO:0000166
Trre15g00955 1054 Pfam E1-E2 ATPase 133 348 - -
Trre15g00955 1054 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 378 629 - -
Trre15g00955 1054 SUPERFAMILY HAD-like 366 834 IPR036412 -
Trre15g00955 1054 Gene3D - 365 775 IPR023214 -
Trre15g00955 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 626 IPR023299 GO:0000166
Trre15g00955 1054 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Trre15g00955 1054 PANTHER CALCIUM-TRANSPORTING ATPASE 17 1048 - -
Trre15g00955 1054 FunFam Calcium-transporting ATPase, putative 219 364 - -
Trre15g00955 1054 Pfam haloacid dehalogenase-like hydrolase 365 744 - -
Trre15g00955 1054 SFLD Haloacid Dehalogenase 349 783 - -
Trre15g00955 1054 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
Trre15g00955 1054 FunFam Calcium-transporting ATPase, putative 115 250 - -
Trre15g00955 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1046 IPR023298 -
Trre15g00955 1054 Pfam Cation transporting ATPase, C-terminus 815 1041 IPR006068 -
Trre15g00955 1054 SFLD p-type atpase 349 783 IPR044492 -
Trre15g00955 1054 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00955 Trre-Chr15 7429266 7433261 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00955 6 1052 Primary Pumps ATPases(2) AT4G00900 78.592 0.0 1707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00955 K01537 - gmx:100792952 1881.69