Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00950 ATGACAAATTGTTCTTCTAATTGGGTTTTACTTTTTGAAAAATTTGAATTGGATATATTGGGAGAGTGGATGTTGCTGGTGGTGGGTGCTGTTGAGAGTTTATTGGAGCGAAGTTCGTATGTGCAACTTGCTGATGGATCTCTTGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCATGAGATGAGTTCGAAGGGATTACGTTGCTTAGGTTTGGCATGTAAAGATGAGTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCTCACAAGAAATTGCTTGATCCAACATACTATTCATCGATTGAAAGCGATTTAGTTTTTGTTGGTGTTGTTGGTTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGCAAGCTGGTATTCGAGTTATGGTAATAACCGGAGATAATAAGTCAACAGCGGAGGCTATTTGTAAGGAAATCAAATTGTTCTCTAGAGATGAGGATCTTACAGGTCAAAGTTTGACAGGTAAGGAATTCATGTCTCTTCCTCATTCAGAACAAGTTAAATTATTGTTGAGAGAAGGAGGCAAGGTTTTCTCTCGAGCCGAGCCTAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTAGCAGATGACAATTTTAGTACTATTGTTTCAGCTATCGCTGAGGGTCGCGCTATTTATAATAACATGAAAGCATTTATAAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACAGCTGCTTTGGGGATACCTGAATGTATGATACCAGTGCAACTTTTGTGGGTGAATTTGGTCACCGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATTATGCAGAAGCCACCTCGAAAAAGTGACGATGCTCTTATAAGTACTTGGGTTCTTTTCCGTTACCTAGTAATTGGTTCCTATGTCGGAATTGCAACAGTTGGCATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATGAATCTTGTTAGTGATGGACACACAGTTGTAGAATTGTCACAACTTCTCAACTGGAGAGAATGTCCTTCATGGTCTAATTTCACCGTTTCTTCATTTGACGCTGGTGGCGGTCGCTTGATCACGTTTTCAAACCCCTGTGACTATTTTTCAGTTGGAAAAGTCAAGGCTATGACTCTTTCTCTCTCTGTCTTGGTGGCAATTGAGATGTTTAATTCTTTGAATGCTCTCTCAGAAGAGAATAGCTTGAGGACATTACCACCTTGGAGAAACCCTTGGCTTTTGGTAGCAATGACAATATCTTTAGGACTACATTGTCTCATACTTTACATTCCATTCCTCTCTGAGGTGTTTGGTGTTGCTCCACTAAGTTTAAAGGAGTGGTTTTTGGTGATTCTGATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTTGTGAGGAGTCAAAGGAGGAATACAAAACAGAAACAAGCATGA 1647 0.3989 MTNCSSNWVLLFEKFELDILGEWMLLVVGAVESLLERSSYVQLADGSLVPIDDQCRELLLQRLHEMSSKGLRCLGLACKDELGEFSDYYADTHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICKEIKLFSRDEDLTGQSLTGKEFMSLPHSEQVKLLLREGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRAIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISTWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGMNLVSDGHTVVELSQLLNWRECPSWSNFTVSSFDAGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMTISLGLHCLILYIPFLSEVFGVAPLSLKEWFLVILISAPVILIDEILKLVVRSQRRNTKQKQA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00950 548 SUPERFAMILY HAD-like 45 328 IPR036412 -
Trre15g00950 548 Gene3D - 232 544 - -
Trre15g00950 548 PRINTS P-type cation-transporting ATPase superfamily signature 116 127 - -
Trre15g00950 548 PRINTS P-type cation-transporting ATPase superfamily signature 248 260 - -
Trre15g00950 548 PRINTS P-type cation-transporting ATPase superfamily signature 138 148 - -
Trre15g00950 548 PRINTS P-type cation-transporting ATPase superfamily signature 224 243 - -
Trre15g00950 548 SUPERFAMILY Calcium ATPase, transmembrane domain M 65 540 IPR023298 -
Trre15g00950 548 Pfam Cation transporting ATPase, C-terminus 309 535 IPR006068 -
Trre15g00950 548 NCBIfam HAD-IC family P-type ATPase 197 309 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g00950 548 PANTHER CALCIUM-TRANSPORTING ATPASE 28 542 - -
Trre15g00950 548 FunFam Sodium/potassium-transporting ATPase subunit alpha 115 264 - -
Trre15g00950 548 Gene3D - 14 123 IPR023299 GO:0000166
Trre15g00950 548 Pfam haloacid dehalogenase-like hydrolase 115 238 - -
Trre15g00950 548 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 288 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00950 Trre-Chr15 7410010 7412269 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00950 21 546 Primary Pumps ATPases(2) AT4G00900 77.883 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00950 K01537 - gmx:100800498 947.962