Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00947 ATGGTTCTTGATTTGCTAACTTCTGGTCCTACCTCAACTGCAATTTCTCAAATCGTAGAGACCATTAGTGAGTTCCTATTTTGTGCTAGTGATGTACTTGTGGAGAAGGATAGTTTTAAGGAACTTGGTAGTTATTTGGAAAGAATTATGCCGGTTTTAAAAGAATTGAGGAGAGAAAAAGTGAGTGATTCTGAGACATTCAACCATGCTATTGATATTATGAATCGCGAAACGAAAGAAGCGAAGCTACTTGCTTTAGAATGTAGGAAGAAGAGCAAGGTTTATCTGCTAATGAATTGCAGGTCCATTGTAAAGAAGTTAGAAAATCACACGAAGGAGCTAAGCAAGGCGCTTGGTCTTCTTCCTTTAGCTACATCAGGTCTTTCGGCCGGAATATTGGAAGACATTGAAAAGATTTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCAGTAGCAGAAGAGGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGAAAACAATGTCAATCGTTCGTATGCGAATAATTTAATGACTCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAAGTCGACAATGAAGGTTGAACTTGAAGAGTTTAAGAAAGAAATTGAAAATGCCCGCGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATTATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCGTCACCACGTGAAAGGAAACAGAAATACTTGTCAAAACGCCAATCTTTAGGTAGTCGAATATTGGAGCCTTTACAGTCATTTTATTGTCCTATCACACACGATGTTATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGAAGGAAATAAGTTGTGTCCTTTGACACAGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAACACAATGATTACAATTGCTACATTAAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATTAATTGTCTAAAAACTCTTCAAGATTTGTGTGAGCAGAGAGAGCAACACAGAGAATGGTTGATGCTTGAGGACTACATACTAGTTCTTATTCAAATTCTCGGTTCGAGAAACCGCGATATAAGGAATCATGCTCTTGTCATCCTGTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAACGGTTGATAATGCAATTGAATCAATCGTCCATTCTCTTGGACGGCGTCAGGAGGAAAGAAAGTTAGCAGTAGCATTACTGCTTGAATTGTCCAAATATGATTTGGCTCGAGAACATATTGGAAAAGTTCAAGGATGTATACTGCTATTGGTGACTATGTCTAATGGAGATGACAATCAAGCTGCTGAAGATGCAACTGAGGTATTGGATAATCTTTCGTACTCTGATCAGAACGTTATACTAATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCATCTCACCACAGGAACAGATGATGTAAAGATGATTATGGCCGAAACATTAGCAGAAATGGAGTTAACTGACCACAATAAGAAGTCTTTATTTGATGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTGAGGTTAAAAAAGTGGCCACAAAAGCCCTCAAGAATTTATCTAGTTTAAATAGAAATGGACTAGAAATGATTCGACAAAGGGCCGTGCGGCCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACACCAGTTTTATTGCTAGATTCAGATGATGATGTTTTTAACCTTTTCCCTCTTGTCCGTGTGACACAACCTGGTGTGCAACAAAACATTATCCAGACCTTTTATGTATTGTGTCAGTCACCCTCATCGTCACATATCAGGACCAAGCTAAATCAGTGCTCAGCTATCCCAGATTTGGTTAAGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCAAGTGCTGTAAAGTTATTTTCATGCTTGGTAGAGAGCTGTGATGAATCTATCATACTAGAGAATGTTGATCAGAAATGCATCAATACTTTACTTCAGATCCTAAAATCTTCATCTGATGAAGAAGAAATAGTTTCTGCTATGGAAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGTATACTTACGATCATTTATAAATATGGTCAAGACGGTAGAGACAGAGATCTTCAAAGGAGTAACTTGGTAGAGAAAGCGATTGGTGCTTTACGTCGTTTTACAGTTCCAACGAACTTGGAGTGGCAAAAAATTGCAGCTGAAACCGGGATTATAACTGTTTTAGTTCAGTTGCTTGAAAGTGGAACAACCTTGACAAAACAACGTGCGGCGATATGTCTTGCTGAATTTTCTAAAAGCTCGGTTAAGCTCAGCAGACCGATTCCAAAACAAAAAGGACTATTATGTTGCTTCTCAGCTCCAAAAGAAATCGGCTGCAATGTTCATGGAGGAATATGCACCGTTAAGTCATCATTTTGCCTTTTCGTAGCTGAAGCAATTGGACCACTCACAAGGAATCTTGGAGAATCTGATTATGGAGTTTGTGAGGCTTCTTTGGATGCTTTATTAACATTGACTGAAGGTGATAGGATAGAGAGTGGTGGAAAAGTGCTTGCAAAAGCAAATGCAATACCATTAATAATAAAATTTCTTAGCTCTTCATCTCTTGCGTTGCAAGAAAAGTCTCTACAAGTTTTGGAAAGGCTTTTTCAGCTAGTAGAATTCAAACAAATGTATGGAGCTTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGAGTAGTGGTACAGTTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTACTTCATGATCAGTCTTCATATTTTTAA 3018 0.3794 MVLDLLTSGPTSTAISQIVETISEFLFCASDVLVEKDSFKELGSYLERIMPVLKELRREKVSDSETFNHAIDIMNRETKEAKLLALECRKKSKVYLLMNCRSIVKKLENHTKELSKALGLLPLATSGLSAGILEDIEKICDNMEKAGFKAAVAEEEILEKIESGIRENNVNRSYANNLMTLIAEAVGITNEKSTMKVELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPRERKQKYLSKRQSLGSRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTQIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVINCLKTLQDLCEQREQHREWLMLEDYILVLIQILGSRNRDIRNHALVILCILAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAAEDATEVLDNLSYSDQNVILMAKANYFKHLLQHLTTGTDDVKMIMAETLAEMELTDHNKKSLFDGGVLAPLLHLFLHNDLEVKKVATKALKNLSSLNRNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDAQTPVLLLDSDDDVFNLFPLVRVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQCSAIPDLVKLCENENLNLRASAVKLFSCLVESCDESIILENVDQKCINTLLQILKSSSDEEEIVSAMEIICHLPEIDQITQWILDAGILTIIYKYGQDGRDRDLQRSNLVEKAIGALRRFTVPTNLEWQKIAAETGIITVLVQLLESGTTLTKQRAAICLAEFSKSSVKLSRPIPKQKGLLCCFSAPKEIGCNVHGGICTVKSSFCLFVAEAIGPLTRNLGESDYGVCEASLDALLTLTEGDRIESGGKVLAKANAIPLIIKFLSSSSLALQEKSLQVLERLFQLVEFKQMYGASAQMPLVDLTQRSSGTVRSMSARVLAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00947 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Trre15g00947 1005 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Trre15g00947 1005 Gene3D - 13 125 IPR036537 GO:0007166
Trre15g00947 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1005 - -
Trre15g00947 1005 Gene3D - 861 1003 IPR011989 -
Trre15g00947 1005 SUPERFAMILY ARM repeat 343 833 IPR016024 -
Trre15g00947 1005 Gene3D - 431 841 IPR011989 -
Trre15g00947 1005 Gene3D - 337 430 IPR011989 -
Trre15g00947 1005 CDD RING-Ubox_PUB 262 311 IPR045210 -
Trre15g00947 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 336 IPR013083 -
Trre15g00947 1005 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Trre15g00947 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Trre15g00947 1005 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Trre15g00947 1005 Coils Coil 192 219 - -
Trre15g00947 1005 SUPERFAMILY ARM repeat 785 995 IPR016024 -
Trre15g00947 1005 SMART arm_5 706 745 IPR000225 GO:0005515
Trre15g00947 1005 SMART arm_5 916 957 IPR000225 GO:0005515
Trre15g00947 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Trre15g00947 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Trre15g00947 1005 SMART arm_5 446 487 IPR000225 GO:0005515
Trre15g00947 1005 SUPERFAMILY RING/U-box 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00947 Trre-Chr15 7402147 7406171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00947 249 1005 U-box Gene Family AT1G76390 27.681 1.35e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00947 - - psat:127076110 1732.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00947 15 7402147 7406171 Trre15g00947 15 7402147 7406171 ECH