Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00937 ATGGAATATGGTCAATATAGTTATTCAACAGAAGCTGGTGAGGAAGAAACTTACACAACTAGTATCACAAGTTCCATGAGAAAGAAGAAAAACAAGAATCCAAAGAGGTTTAGTGATGAACAAATCAAATCATTAGAAACTATGTTTGAGACTGAATCAAGACTTGAACCTAGAAAGAAGTTGCAATTGGCAAGAGAACTTGGATTGCAACCAAGACAAGTTGCTATTTGGTTTCAAAATAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAATAAACTTCAAAATAGTTACAACAATTTGGCTTCTAAGTTTGAATCAATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGAATCAGGAAATGGAGGAACAATCAAATGTGAGGCTGAGATAAAACCAAGTACTTCAATAGAAAGATCAGAACATGTTCTTGATGTTCTTTCAGATGATGACACAAGCATAAAGGTTGAATACTTTGGAATGGAAAATGAACCTGGCCTAATGAATTTTGCTGAACATGCTGATGGTTCCTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATCTATTAGGCCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTAA 723 0.3485 MEYGQYSYSTEAGEEETYTTSITSSMRKKKNKNPKRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESGNGGTIKCEAEIKPSTSIERSEHVLDVLSDDDTSIKVEYFGMENEPGLMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00937 240 MobiDBLite consensus disorder prediction 1 37 - -
Trre15g00937 240 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Trre15g00937 240 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Trre15g00937 240 Pfam Homeodomain 35 86 IPR001356 GO:0003677
Trre15g00937 240 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Trre15g00937 240 SMART HOX_1 28 92 IPR001356 GO:0003677
Trre15g00937 240 MobiDBLite consensus disorder prediction 1 27 - -
Trre15g00937 240 FunFam Homeobox-leucine zipper protein ATHB-7 16 88 - -
Trre15g00937 240 Gene3D - 23 97 - -
Trre15g00937 240 CDD homeodomain 37 89 IPR001356 GO:0003677
Trre15g00937 240 MobiDBLite consensus disorder prediction 133 154 - -
Trre15g00937 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 159 IPR045224 GO:0003700
Trre15g00937 240 Coils Coil 80 128 - -
Trre15g00937 240 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Trre15g00937 240 MobiDBLite consensus disorder prediction 133 158 - -
Trre15g00937 240 Pfam Homeobox associated leucine zipper 88 129 IPR003106 GO:0006355|GO:0043565
Trre15g00937 240 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00937 Trre-Chr15 7267803 7269112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00937 2 240 Homeobox Transcription Factor Family AT2G46680 48.450 2.05e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g00937 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00937 K09338 - gmx:100811208 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00937 15 7267803 7269112 Trre15g00937 15 7267803 7269112 ECH