Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00935 ATGGGTTTGGTTGAAAAGAGTCCAAAGAATCTTCATTTGCATAGACATCATATTCAACATAAGCATGAGTTCAAAGGTGTTCCAAAAGGGTTTATGGCAATAAAAGTTGGTTTAGGAGAAGAACAACAAAGGTTTGTTGTTCCTGTTTTGTACTTCAATCATCCTCTTTTCATTCAACTATTGAAAGAGGCAGAAGAAGAATATGGATTTGATCAAAAGGGAACAATTACTATTCCTTGCCATGTTGAAGAATTCAAACAAGTTCGTGGTTTGATTGATAGAGACAAGAATCTTCATCAACATGTTGGTTGTTTTGGTTTATGA 324 0.3426 MGLVEKSPKNLHLHRHHIQHKHEFKGVPKGFMAIKVGLGEEQQRFVVPVLYFNHPLFIQLLKEAEEEYGFDQKGTITIPCHVEEFKQVRGLIDRDKNLHQHVGCFGL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00935 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 19 87 IPR003676 GO:0009733
Trre15g00935 107 Pfam Auxin responsive protein 21 88 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00935 Trre-Chr15 7209416 7209739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00935 9 99 Calmodulin-binding Proteins AT5G20810 43.478 4.53e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00935 K14488 - gmx:111188139 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05399 13 58666121 58666617 Trre15g00935 15 7209416 7209739 PCT