Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00930 ATGGAAGAATTCATCATTTCACTCCCTCATGAAAACCCTTCTCCACAAAAACAAACACAAACCCTTCAACAAAAGCTTCAATTTTTACTCCAAACCCAATCCGATAATTGGGTCTATGCCATTTTTTGGCAAACAACAAAAGATGAGCAAGGTAACCCTATCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAACAAAGAAACAACAACTTCAAATAGAAGAAACGACACTGACACTGACACATGCACAAATGGAGAAGCTGAATGGTTCTATGTTATGTCGTTGACTCGAAATTTTTGTGTCGGTAATTTTTCTTCCATTTCTTTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTAAATAGCAAACATGAACTTCAAGTTTATAATTGTGAGAGATCCAGTGAAGCACACATGCACGGAATCGAAACCTTAATATGTATTCCAACAACTAACGGCGTAATTGAAATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTCGTACATCAAGCAAAATCTATGTTCCAAACAATATCGTTAGAATCAAACTCAAAATCAGATCTTATCTCCACCACCCCACTCGACAAAATCCAAACTCTCGACCAAAACATCTCATCCTCCAAAACGGGTCTCGTCTCTAGTACTAGAGACGAAACCGAGGAGACACAAAAAAATATGAACAAAAATTTAAAACAAAAGCATAACATTGTTATTTCATCATGTTATGTCGATTCTGAAGATTCTGATTCAGAATATTGTCCACAAATAGCAACACCAAAAAATGGTTCTGCTGATGAGAAAACAGAATTGAAGAAGAGAGGAAGAAAACCATTAACAGGAAAAACTCAAACACCAATAAGCCATGTAGAAGCAGAGAGACAAAGAAGAGAGAAACTGAATCATAGATTCTATGCTTTAAGAGCTGTTGTTCCAAATGTTTCAAAGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAATGAATTAAAAGCAAAGATTAAAGATTTAGAATCTGAGAAAAAAAGGGAATCTAAAAAAGTGAAGATGGAAACTATGGATAATCAAAGTACAGTGACAACTTCAACTGTTGTGGATCAAAAAAGACATTGTAATAATAGTGTTATTGCTTTGGAAATTGATGTGAAGATTATAGGAAATGATGCTATGGTTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGCTAGATTAATGAATGTATTCAAGGATTTGAAGTTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGATGTTATGCTTCAAGATGTTTTTGTTGTTCAAGTTCCTAAAGAGATGAGAAATGAAGGGAGTCTTAAATCTGCAATTCTCATGAGATTAGATGATCAGGAGTGA 1401 0.349 MEEFIISLPHENPSPQKQTQTLQQKLQFLLQTQSDNWVYAIFWQTTKDEQGNPILSWGEGHFQGTNKETTTSNRRNDTDTDTCTNGEAEWFYVMSLTRNFCVGNFSSISLPGKAFALDSVLWLNSKHELQVYNCERSSEAHMHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQAKSMFQTISLESNSKSDLISTTPLDKIQTLDQNISSSKTGLVSSTRDETEETQKNMNKNLKQKHNIVISSCYVDSEDSDSEYCPQIATPKNGSADEKTELKKRGRKPLTGKTQTPISHVEAERQRREKLNHRFYALRAVVPNVSKMDKASLLSDAVDYINELKAKIKDLESEKKRESKKVKMETMDNQSTVTTSTVVDQKRHCNNSVIALEIDVKIIGNDAMVRVQSENVNHPGARLMNVFKDLKFQVHHASISCVNDVMLQDVFVVQVPKEMRNEGSLKSAILMRLDDQE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00930 466 MobiDBLite consensus disorder prediction 62 80 - -
Trre15g00930 466 Coils Coil 327 361 - -
Trre15g00930 466 MobiDBLite consensus disorder prediction 210 231 - -
Trre15g00930 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Trre15g00930 466 MobiDBLite consensus disorder prediction 58 80 - -
Trre15g00930 466 PANTHER MYC 16 461 IPR045084 GO:0003700|GO:0006355
Trre15g00930 466 MobiDBLite consensus disorder prediction 255 299 - -
Trre15g00930 466 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 22 180 IPR025610 -
Trre15g00930 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 350 IPR036638 GO:0046983
Trre15g00930 466 SMART finulus 294 343 IPR011598 GO:0046983
Trre15g00930 466 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Trre15g00930 466 Gene3D - 284 354 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00930 Trre-Chr15 7149958 7151358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00930 21 437 EF-hand Containing Proteins AT5G46830 34.172 4.94e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00930 bHLH-MYC_N 3.5e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00930 - K13422 var:108347008 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00930 15 7149958 7151358 Trre15g00930 15 7149958 7151358 ECH