Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00920 ATGGGGAAGAAAGGAAGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCAACAAAAGATAGTGACAAAAGAAGTGCTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAACCAGTGAATCATGAAACAGTGAATAATTCTCAACAAAGTACACCAACAAAGTTGAAGAATGATGTTGTTGCTACTGTTACAAATGTTGTTTCAAGGACAGATCAAGATGAAAAACATGCTCTTGCTGTTGCTATGGCTACAGCTGAGGCAGCAAGAGCTACTGCTCAAGATGCTGTTGAGGTTGCTAGGTTGACTAAGCCTTCAAATCATGCTAGAGAGCATTATGCTGCTGTTGTCATTCAAACTTCTTTTAGAGGTTATTTGGCAAGAAGGGCGCTTCGCGCACTTAAGGGATTGGTGAAGTTACAAGCTTTAGTGAGAGGTCATAATGTTAGGAAACAAGCAAAGATGACACTTAGGTGTATGCAGGCTCTTGTTAGAGTACAAGCAAGAGTTCTTGATCAAAGGATAAGGTCTACTTCACATGAAGGAAGTAGAAAATCAGCCTTTAGTGACACGGCAAGTGTTTGGGATTCGCGGTATCTTCAAGATATTTCAGATAGGAAATCAATATCGAGAGAAGGAAGTAGTGTCGCGGATGATTGGGATGATCGTCCGCACACTGTTGAAGAAGTTAAGGCTATGTTGCAACAAAGGAAGGAAGCAGCTATGAAGAGGGAAAAGTCCTTATCCCAAGCTTTTTCACAACAGATTTGGAGAAATGGCAGGACATCATCAATTGGAAATGAAGATGAACTTGAAGAAAGACCAAAATGGCTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGAAGAGCTTCAACTGATCAAAGAGACTCTATCAAGACTGTAGAAGTTGACACATCTCAACCTTATTCGTATCTCGGATCTAATTACAGAAGATCGCATCCGAACTATCAATATAATCCACACCACCAACCACAAAGACATTCCATTGCTTCACCACTCCATAGGACACACCAAAATGGATCCGTTCACAACCAATCCATCACTACACCGTCTCCGGCGAAATCAAGACCTATCCAAGTCCGGTCGTCGAGTCCTCGTTGTGTTCGAGAAGATAGAAGCTACCACCACACTTCTCAAACACCTAGCTTAAGGTCTAATTATCATTACAATGGCAATTTGTACCAAAATAGTAGGGTAGGAACAAGTAGTAATGGTAGTAACGGCGTTGCTTCTGCTACATCTACATTGCCTAATTACATGCAAGCAACCGAGTCTGCGAAGGCTCGAATCCGGTCACAGAGTGCACCGAGACAAAGGCCATCGACACCGGAGAGAGATAGATCCGGATCAGTGAAGAAAAGGCTTTCTTTTCCTGCTCCTGATCCTTATAATGTAGGAGGAGCTGCAGGTTATGGAAATTATGGACACAGTTTAAGGAGTCCAAGTTTCAAAAGTGTGAATGTAACATCACATTACGGGTTGGAGCAAAATTCGAATTACTCTTCTTGTTATACCGAGAGTCTTGGTGGCGAGGTTTCGCCTTCTTCAACCGGCGACCTTAGAAGGTGGTTGAGATGA 1656 0.4197 MGKKGSSSWLTAVKRAFRSPTKDSDKRSARRREDCDQEEDEEKKREKRRWIFRKPVNHETVNNSQQSTPTKLKNDVVATVTNVVSRTDQDEKHALAVAMATAEAARATAQDAVEVARLTKPSNHAREHYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSTSHEGSRKSAFSDTASVWDSRYLQDISDRKSISREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTSQPYSYLGSNYRRSHPNYQYNPHHQPQRHSIASPLHRTHQNGSVHNQSITTPSPAKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYHYNGNLYQNSRVGTSSNGSNGVASATSTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVKKRLSFPAPDPYNVGGAAGYGNYGHSLRSPSFKSVNVTSHYGLEQNSNYSSCYTESLGGEVSPSSTGDLRRWLR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00920 551 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Trre15g00920 551 PANTHER IQ-DOMAIN 5-RELATED 1 485 - -
Trre15g00920 551 MobiDBLite consensus disorder prediction 404 465 - -
Trre15g00920 551 FunFam IQ-domain 11 126 177 - -
Trre15g00920 551 Gene3D - 124 186 - -
Trre15g00920 551 MobiDBLite consensus disorder prediction 320 388 - -
Trre15g00920 551 MobiDBLite consensus disorder prediction 1 46 - -
Trre15g00920 551 MobiDBLite consensus disorder prediction 304 490 - -
Trre15g00920 551 MobiDBLite consensus disorder prediction 18 46 - -
Trre15g00920 551 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Trre15g00920 551 MobiDBLite consensus disorder prediction 530 551 - -
Trre15g00920 551 SMART iq_5 149 170 IPR000048 GO:0005515
Trre15g00920 551 SMART iq_5 126 148 IPR000048 GO:0005515
Trre15g00920 551 Pfam Protein of unknown function (DUF4005) 390 496 IPR025064 -
Trre15g00920 551 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
Trre15g00920 551 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
Trre15g00920 551 MobiDBLite consensus disorder prediction 304 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00920 Trre-Chr15 7051685 7054542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00920 1 551 IQD Protein Family AT1G01110 57.968 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00920 - - gmx:100799284 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00920 15 7051685 7054542 Trre15g00920 15 7051685 7054542 ECH