Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00919 ATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTCATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCAATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATCGATCATTACCTCTTCAACATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCCACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACATTGTATCCTCAAAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAGAATGTCTACCCCTACTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAATGACACAAATTCCAGTTTTACCCCAACATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCATCAGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACGGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTTCTGAGCAACAACATTCCTCATCTTGA 822 0.4002 MVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQMTQIPVLPQHYSSQGILSFPSSVAMPTISAASATATTAIATSVALTGVGSSQATGTASEQQHSSS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00919 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 108 IPR000504 GO:0003723
Trre15g00919 273 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Trre15g00919 273 Gene3D - 3 102 IPR012677 -
Trre15g00919 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Trre15g00919 273 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre15g00919 273 PANTHER BOULE-RELATED 7 246 - -
Trre15g00919 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00919 Trre-Chr15 7043006 7045222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00919 12 92 C2H2 Transcription Factor Family AT2G19380 41.975 3.67e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00919 - - gmx:100786208 412.535