Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00918 ATGTCTCAACAAAGACATCCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTCATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCAATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATCGATCATTACCTCTTCAACATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCCACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACATTGTATCCTCAAAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAGAATGTCTACCCCTACTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAATGACACAAATTCCAGTTTTACCCCAACATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCATCAGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACGGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTTCTGAGCAACAACATTCCTCATCTTGA 846 0.3995 MSQQRHPHMVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQMTQIPVLPQHYSSQGILSFPSSVAMPTISAASATATTAIATSVALTGVGSSQATGTASEQQHSSS 281
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00918 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Trre15g00918 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Trre15g00918 281 Gene3D - 1 110 IPR012677 -
Trre15g00918 281 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
Trre15g00918 281 SMART rrm1_1 25 97 IPR000504 GO:0003723
Trre15g00918 281 CDD RRM_RBM24_RBM38_like 24 99 - -
Trre15g00918 281 PANTHER BOULE-RELATED 9 254 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre15g00918 Trre-Chr15 7042982 7045222 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00918 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 3.80e-15 73.6