Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00917 ATGTCTCAACAAAGACATCCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGATACAACATTTACCAAACTTTTTGTTGGAGGATTAGCTTGGGAGACTCAAAGGGACACAATGAGAAATTATTTTGAACAATTTGGAGAGATCTTAGAAGCTGTTGTCATCACAGATAAGTATACTGGAAGATCCAAAGGTTATGGTTTTGTCACATTTAAGGATCCTGAGGCAGCAATAAGGGCATGTCAGAATCCATCTCCAGTTATTGATGGTAGGAGAGCAAATTGCAATATTGCTTCTCTTGGTGCAAACAAGAATCGATCATTACCTCTTCAACATCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAACTCCTTATCATGGTTCTTCATCTACAATTTTCCATCAACCCACTAGGCAATACAATTTACCTTATTCAGCTTATGGATATTCTGGCTATTCACAAGACACATTGTATCCTCAAGTAAGTGTTAATAGCTATTACAATGTTTATGGAGTTCAACAATATTCACCTTACTATCCATCTGTTGGAGCTGCTGGAGCAATGGGGATGATCCAGAATGTCTACCCCTACTATGGTCAATATGCACAAAATATTCATGGCCAAGGCTTTGGAATTCAATACCCCCAAATGACACAAATTCCAGTTTTACCCCAACATTATAGTTCACAAGGAATATTGTCATTTCCTTCTTCAGTAGCAATGCCAACCATTAGTGCAGCATCAGCAACCGCAACTACTGCAATCGCAACATCTGTTGCACTAACGGGGGTTGGTAGTTCACAAGCCACTGGAACAGCTTCTGAGCAACAACATTCCTCATCTTGA 858 0.3974 MSQQRHPHMVSGNNQDQYNDTTFTKLFVGGLAWETQRDTMRNYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLPLQHHGRFRPPHGVVASTPYHGSSSTIFHQPTRQYNLPYSAYGYSGYSQDTLYPQVSVNSYYNVYGVQQYSPYYPSVGAAGAMGMIQNVYPYYGQYAQNIHGQGFGIQYPQMTQIPVLPQHYSSQGILSFPSSVAMPTISAASATATTAIATSVALTGVGSSQATGTASEQQHSSS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00917 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Trre15g00917 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Trre15g00917 285 PANTHER BOULE-RELATED 9 258 - -
Trre15g00917 285 SMART rrm1_1 25 97 IPR000504 GO:0003723
Trre15g00917 285 SUPERFAMILY RNA-binding domain, RBD 5 115 IPR035979 GO:0003676
Trre15g00917 285 CDD RRM_RBM24_RBM38_like 24 99 - -
Trre15g00917 285 Gene3D - 1 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00917 Trre-Chr15 7042982 7045222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00917 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 4.02e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00917 - - gmx:100786208 414.461