Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00916 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTTAGGTTCCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATTCAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCAGGCTTCTGGAAAGCCACAGGCCGTGACAAAGTTATATATAGCAATGGGAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTATAAAGGTCGCGCCCCTCATGGCCAAAAATCTGACTGGATCATGCATGAGTATAGACTGGACGATAATACCACAACCAACGACACCAATTTGGCATCAAATGTGATTGGTGATGGTGGTCAAGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGATAGTCCTTTAGGCTCAGGAGATGGAAGAAGAAACCAACACTTGTATGATGCTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGGGTTGCAAAGAAGAGAATTATGAAGCAAATTACAATAATTATGGAAGGTTTACAAGGCCTTTTGATCAAACTAGCATGAACAACAATGGTGGTTATAATAATGAAAGATACATGAAACTTCCAAGCTTAGAGAGTCCAAAATCAACAAGCATGGACAACAATGACAACAACAATGATCATCATCATAATGACAATAATGAGTACCATGCACTAATTCAAGAAAATGAAGGGTCATTCACTGATCAACATAATAACATGGTTAATAATCCATTAGAGGCATCATCATCATCAATGTTGATAGCATCATGTGGTGGTGGTCTCACTAATTGGGTAGCTTTGGATAGACTTGTTGCTTCTCAATTAAATGGACAAACTGAGGCTTCTAGGCAACTGGCTTGCTTTAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCTACCCTTAGATCATCATCATCAAGTTCATCTTTGTCAACGCACGCCAAAACTACTACTGCTACTACTACTACTGCTACCACTACTGTTAGTTCTTACATTAGTCCCTCACAAGATTATGGAAGTGAGATTGACCTTTGGAACTTCACTCGATCAACTTCTTCCTTGTTGACATCTTCCGAACCACTATGCCACGTGTCGAATACATCTGTGTGA 1314 0.3995 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTNDTNLASNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGDGRRNQHLYDACDEGALEQILQQMGRGCKEENYEANYNNYGRFTRPFDQTSMNNNGGYNNERYMKLPSLESPKSTSMDNNDNNNDHHHNDNNEYHALIQENEGSFTDQHNNMVNNPLEASSSSMLIASCGGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDLQLPTLRSSSSSSSLSTHAKTTTATTTTATTTVSSYISPSQDYGSEIDLWNFTRSTSSLLTSSEPLCHVSNTSV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00916 437 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Trre15g00916 437 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Trre15g00916 437 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Trre15g00916 437 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Trre15g00916 437 MobiDBLite consensus disorder prediction 258 281 - -
Trre15g00916 437 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 291 - -
Trre15g00916 437 FunFam NAC domain-containing protein 24 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00916 Trre-Chr15 6991829 6993498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00916 1 436 NAC Transcription Factor Family AT2G46770 53.363 9.68e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g00916 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00916 - - gmx:100793308 583.948