Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00908 ATGTCGATCGGAGAGGTTGCTTGCAGCTACTCACTCATGATCCTTCATGATGATAACATCGCTGTCACTGGTGAGAAAATCTCAACTTTGTTGAAAGCTGCAAATGTTAATGTTGAAGCCTACTGGCCAAGCTTATTCGCTAAACTTGCCGAGAAGAAAAACCTTGATGATTTGATATTGAATGCTGCCGGAGGTGGGGCTCCTGTTTCTGTTTCTGCCCCAGTTGCTGCTGCTGCCACCACTGCAGCTGCTGCTCCAACTGAGGAGAAGAAGGAAGAACCCAAGGAAGAGAGTGACGACGACATGGGATTCAGCTTGTTTGATTAA 327 0.4679 MSIGEVACSYSLMILHDDNIAVTGEKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLILNAAGGGAPVSVSAPVAAAATTAAAAPTEEKKEEPKEESDDDMGFSLFD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00908 108 Hamap 50S ribosomal protein L12 [rpl12]. 6 108 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trre15g00908 108 Gene3D - 1 62 IPR038716 -
Trre15g00908 108 FunFam 60S acidic ribosomal protein P1 1 63 - -
Trre15g00908 108 MobiDBLite consensus disorder prediction 80 108 - -
Trre15g00908 108 CDD Ribosomal_P1 5 107 - -
Trre15g00908 108 MobiDBLite consensus disorder prediction 86 102 - -
Trre15g00908 108 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 108 - -
Trre15g00908 108 Pfam 60s Acidic ribosomal protein 22 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00908 Trre-Chr15 6912342 6913687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00908 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.407 5.56e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00908 K02942 - sind:105160280 124.79