Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00904 ATGAATGAAACAGAGGTGAAAGAAGAGATGAAGAACGATCATGATAATGATGATGATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTCTGCTTGTTGAATCTGATCGTGCTACTCGAAGATTAATTACTGCAATTCTCAAGAATTGCAGTTACAGAGTTATTGCAGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGACGAAGGCAACTGACATTGATCTCATATTAACAGAAATGGAGTTGCCTGCAATATCTGGATTAGAACTCCTTTCTAAAATTATGGACCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAACATGTTATTAACAGGCCTCTCCAAAATACAACATCTGCTCAAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCTGGCAATCAATCAACTGATTCTGATTCTGTGGCTTCCTCACAGAAAAATGATAAATGCAGTGAGAAATTGAGCGAGGATCAAAGCACATGTGCACTGCCATTTTCTGATGCTGAGAATGCATACATGGATAATATGCAAAATACCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACATAAGTGTACGGGGATCTACTAAGCCTAATGATGAAACAGAAGAGGCTGTATGTTGTAACAAAACTTTTAAATTGACAGATCCAAGGCTAGAACAAGATCTCAGTACTGCTGAAATTGAACCCAAAAATGAAATACTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATGTTGATACCGAGATACGCCGATGCAGTGATGAACCTATAGAACCTTCTAGAAGAGCTATTGACTTGATTTCCACATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGCTCATGCAAACAAGCAAGTGAAGCATCAGAGGAATTGCAAAGATTAAACCACTCAAACACTTCTGCCTTTTCCCGGTATGATAGTAGTAAGATGATGCGGCCACTTTTTCAAAACCCCAATTGGAATTCTAATAAATCTCATGAATTATCTGAAGTAACTGCTGGTAATTGTTTTCAGTATGGTGGCTTAATTAAAACGGAGAATATGACTACTGCAGTAATGACTCAGTATGGACAACTTCGACCAACATTATTTAACACTGGACCCTTAGCTGATAATGTTTTCCATCACACGTGGACTCCTAAATCAAATTCCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCCTCTCAGTCCAATCCCGAAAGTCACAATTCAGATCATCGTCATAATTGCTCTTATGATGTTAACTACAGTTTTCGTAATCAGGATGTTGCTGAAAAAATTGATTTGGATCATGTAGTGCATGATTCTCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATGATATTAATGGTAGTGGCAATGATGGAAGGGCTGCTTCAAATGTGGTTACCAAGAACTCGAGAAGTTCTAGTGATGGTAGGCGCTACAAACATGATTTTTATGATTATGATGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCGAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTTGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAACAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1899 0.3844 MNETEVKEEMKNDHDNDDDDQSKEVFRWEMLLPKINVTVLLVESDRATRRLITAILKNCSYRVIAVSNGLKAWETLKTKATDIDLILTEMELPAISGLELLSKIMDHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKHVINRPLQNTTSAQKNLKIATEDNFAGNQSTDSDSVASSQKNDKCSEKLSEDQSTCALPFSDAENAYMDNMQNTSLMKCSLKLSNIDVLKHEESNISVRGSTKPNDETEEAVCCNKTFKLTDPRLEQDLSTAEIEPKNEILRAELSRENPDVDTEIRRCSDEPIEPSRRAIDLISTFGKSNKQASEFSGSSCKQASEASEELQRLNHSNTSAFSRYDSSKMMRPLFQNPNWNSNKSHELSEVTAGNCFQYGGLIKTENMTTAVMTQYGQLRPTLFNTGPLADNVFHHTWTPKSNSQRESSPFPSSSSSQSNPESHNSDHRHNCSYDVNYSFRNQDVAEKIDLDHVVHDSPTAGQGFGNELCHASNDINGSGNDGRAASNVVTKNSRSSSDGRRYKHDFYDYDDEFRSSDSQRSSRREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00904 632 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g00904 632 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Trre15g00904 632 SMART REC_2 37 152 IPR001789 GO:0000160
Trre15g00904 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 344 IPR045279 GO:0009736
Trre15g00904 632 MobiDBLite consensus disorder prediction 525 545 - -
Trre15g00904 632 Pfam CCT motif 574 616 IPR010402 GO:0005515
Trre15g00904 632 MobiDBLite consensus disorder prediction 444 480 - -
Trre15g00904 632 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Trre15g00904 632 MobiDBLite consensus disorder prediction 445 471 - -
Trre15g00904 632 MobiDBLite consensus disorder prediction 183 201 - -
Trre15g00904 632 MobiDBLite consensus disorder prediction 183 206 - -
Trre15g00904 632 Gene3D - 37 277 - -
Trre15g00904 632 SUPERFAMILY CheY-like 37 168 IPR011006 -
Trre15g00904 632 ProSiteProfiles CCT domain profile. 574 616 IPR010402 GO:0005515
Trre15g00904 632 MobiDBLite consensus disorder prediction 525 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00904 Trre-Chr15 6872985 6877445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00904 569 623 Response Regulator Gene Family AT5G24470 69.091 2.53e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre15g00904 Response_reg 6.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00904 K12130 - gmx:100791698 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00904 15 6872985 6877445 Trre15g00904 15 6872985 6877445 ECH