Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00903 ATGAATGAAACAGAGGTGAAAGAAGAGATGAAGAACGATCATGATAATGATGATGATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTCTGCTTGTTGAATCTGATCGTGCTACTCGAAGATTAATTACTGCAATTCTCAAGAATTGCAGTTACAGAGTTATTGCAGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGACGAAGGCAACTGACATTGATCTCATATTAACAGAAATGGAGTTGCCTGCAATATCTGGATTAGAACTCCTTTCTAAAATTATGGACCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAATGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAACATGTTATTAACAGGCCTCTCCAAAATACAACATCTGCTCAAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCTGGCAATCAATCAACTGATTCTGATTCTGTGGCTTCCTCACAGAAAAATGATAAATGCAGTGAGAAATTGAGCGAGGATCAAAGCACATGTGCACTGCCATTTTCTGATGCTGAGAATGCATACATGGATAATATGCAAAATACCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACATAAGTGTACGGGGATCTACTAAGCCTAATGATGAAACAGAAGATCCAAGGCTAGAACAAGATCTCAGTACTGCTGAAATTGAACCCAAAAATGAAATACTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATGTTGATACCGAGATACGCCGATGCAGTGATGAACCTATAGAACCTTCTAGAAGAGCTATTGACTTGATTTCCACATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGCTCATGCAAACAAGCAAGTGAAGCATCAGAGGAATTGCAAAGATTAAACCACTCAAACACTTCTGCCTTTTCCCGGTATGATAGTAGTAAGATGATGCGGCCACTTTTTCAAAACCCCAATTGGAATTCTAATAAATCTCATGAATTATCTGAAGTAACTGCTGGTAATTGTTTTCAGTATGGTGGCTTAATTAAAACGGAGAATATGACTACTGCAGTAATGACTCAGTATGGACAACTTCGACCAACATTATTTAACACTGGACCCTTAGCTGATAATGTTTTCCATCACACGTGGACTCCTAAATCAAATTCCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGTTCCTCCTCTCAGTCCAATCCCGAAAGTCACAATTCAGATCATCGTCATAATTGCTCTTATGATGTTAACTACAGTTTTCGTAATCAGGATGTTGCTGAAAAAATTGATTTGGATCATGTAGTGCATGATTCTCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATGATATTAATGGTAGTGGCAATGATGGAAGGGCTGCTTCAAATGTGGTTACCAAGAACTCGAGAAGTTCTAGTGATGGTAGGCGCTACAAACATGATTTTTATGATTATGATGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCGAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTTGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAACAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1863 0.3859 MNETEVKEEMKNDHDNDDDDQSKEVFRWEMLLPKINVTVLLVESDRATRRLITAILKNCSYRVIAVSNGLKAWETLKTKATDIDLILTEMELPAISGLELLSKIMDHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKHVINRPLQNTTSAQKNLKIATEDNFAGNQSTDSDSVASSQKNDKCSEKLSEDQSTCALPFSDAENAYMDNMQNTSLMKCSLKLSNIDVLKHEESNISVRGSTKPNDETEDPRLEQDLSTAEIEPKNEILRAELSRENPDVDTEIRRCSDEPIEPSRRAIDLISTFGKSNKQASEFSGSSCKQASEASEELQRLNHSNTSAFSRYDSSKMMRPLFQNPNWNSNKSHELSEVTAGNCFQYGGLIKTENMTTAVMTQYGQLRPTLFNTGPLADNVFHHTWTPKSNSQRESSPFPSSSSSQSNPESHNSDHRHNCSYDVNYSFRNQDVAEKIDLDHVVHDSPTAGQGFGNELCHASNDINGSGNDGRAASNVVTKNSRSSSDGRRYKHDFYDYDDEFRSSDSQRSSRREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00903 620 SUPERFAMILY CheY-like 37 168 IPR011006 -
Trre15g00903 620 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g00903 620 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Trre15g00903 620 ProSiteProfiles CCT domain profile. 562 604 IPR010402 GO:0005515
Trre15g00903 620 SMART REC_2 37 152 IPR001789 GO:0000160
Trre15g00903 620 MobiDBLite consensus disorder prediction 183 208 - -
Trre15g00903 620 MobiDBLite consensus disorder prediction 513 533 - -
Trre15g00903 620 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 352 IPR045279 GO:0009736
Trre15g00903 620 MobiDBLite consensus disorder prediction 432 468 - -
Trre15g00903 620 MobiDBLite consensus disorder prediction 433 459 - -
Trre15g00903 620 Gene3D - 37 255 - -
Trre15g00903 620 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Trre15g00903 620 MobiDBLite consensus disorder prediction 183 201 - -
Trre15g00903 620 MobiDBLite consensus disorder prediction 513 539 - -
Trre15g00903 620 MobiDBLite consensus disorder prediction 253 273 - -
Trre15g00903 620 Pfam CCT motif 562 604 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00903 Trre-Chr15 6872985 6877445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00903 557 611 Response Regulator Gene Family AT5G24470 69.091 2.13e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre15g00903 Response_reg 6.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00903 K12130 - gmx:100791698 535.028