Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00901 ATGCCGTGGTGTCACCGTAATAAACCTAAACAAAACCAGAGAGATTCAGAATCACATAAGGGAGGAAATATTGGAAAGAGAGATCACCCTGCATTGAAAATGGATGCGCACAGCTCTCACCACGGCCAAATAATTGAAATCAGTGGAGATCTTCCTGATGCGGGAAGGAAGATTTGCGGGGAAGCACCATGTGGATTCTCAGATGCCGGATCCATCTCTGTGGATTCTAAAGAACGTTCAACATCTATGCGAAAGCTTTTGGTGGCAGTGATCCTTTGTGTTATTTTCATGACTGTTGAATTGGTTGGTGGCATCAAAGCAAACAGTCTTGCAATATTGACCGATGCAGCACATTTGCTTTCCGATGTTGCCGCATTTGCCATCTCCTTGTTTTCGTTATGGGCTGCAGGATGGGAAGCTACTCCTCGTCAGTCTTACGGATTTTACAGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAACTAATATGGCTGCTCACTGGGATTATTGTCTATCAAGCCATTGATAGACTTGTTACCGGTTCTCAAGATGTCGATGGTTTTCTAATGTTTCTAGTTGCTGCATTTGGTCTTGTGGTTAACATCATTATGGCTGTGTTATTAGGTCATGATCATGGTCATGGCCATGGCCATGACCACGGACATGGTCATCATGGCCACAGCCATGGACTTACAGTTTCTACTCATGATCTTACAAAAGATGAGCACCACCATCATACTCATGATCATGGCCACAGCACTCACCATCATGATGAAAACAACTCAAAAGATGCACATCATCACGGCCACGACGGTGTTACCGAACCACTTCTCAGTGAATCAAAAGACAAGTCAAAGAAGAAGCGCAACATAAATGTGCAAGGCGCTTATCTCCACGTACTCGGCGACTCTATCCAGAGTGTTGGTGTAATGATTGGTGGAGCAGTCATATGGTATAAGCCTGAATGGAAAATAGTTGATTTAATTTGTACTCTTTTCTTTTCGTTAATCGTTTTGGGAACAACTATCAACATGCTGCGAAACATTTTGGAAGTTCTGATGGAAAGCACACCTCGCGAGATTGATGCTACTCAGCTTGAAAGGGGAATATTGGAAATGGAAGAAGTTGTAGCTGTTCATGAGCTGCACATTTGGGCCATTACAGTTGGAAAGATTTTACTAGCATGTCATGTTAAAATCAACCGCGACGCTGACGCTGACATGGTGTTGGACAAAGTTGTTGACTACATCAAAAGGGTTTATAACATCAGCCATGTAACTATACAGATCGAGCGTTAG 1299 0.4296 MPWCHRNKPKQNQRDSESHKGGNIGKRDHPALKMDAHSSHHGQIIEISGDLPDAGRKICGEAPCGFSDAGSISVDSKERSTSMRKLLVAVILCVIFMTVELVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFYRIEILGALVSIQLIWLLTGIIVYQAIDRLVTGSQDVDGFLMFLVAAFGLVVNIIMAVLLGHDHGHGHGHDHGHGHHGHSHGLTVSTHDLTKDEHHHHTHDHGHSTHHHDENNSKDAHHHGHDGVTEPLLSESKDKSKKKRNINVQGAYLHVLGDSIQSVGVMIGGAVIWYKPEWKIVDLICTLFFSLIVLGTTINMLRNILEVLMESTPREIDATQLERGILEMEEVVAVHELHIWAITVGKILLACHVKINRDADADMVLDKVVDYIKRVYNISHVTIQIER 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00901 432 NCBIfam cation diffusion facilitator family transporter 83 432 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre15g00901 432 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 360 431 IPR036837 -
Trre15g00901 432 MobiDBLite consensus disorder prediction 8 30 - -
Trre15g00901 432 MobiDBLite consensus disorder prediction 241 286 - -
Trre15g00901 432 MobiDBLite consensus disorder prediction 214 233 - -
Trre15g00901 432 SUPERFAMILY Cation efflux protein transmembrane domain-like 80 355 IPR027469 -
Trre15g00901 432 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 39 432 - -
Trre15g00901 432 Gene3D Cation efflux protein transmembrane domain 82 353 IPR027469 -
Trre15g00901 432 Pfam Cation efflux family 86 354 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre15g00901 432 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00901 Trre-Chr15 6861974 6865365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00901 34 432 Inorganic Solute Cotransporters AT2G46800 69.608 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00901 K14689 - gmx:100790458 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00901 15 6861974 6865365 Trre15g00901 15 6861974 6865365 ECH