Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00900 ATGGAGAGGCTTCAAGGACCTATCAATTCTTGTCTTTTTGGTGAAGTAAATTGTTTAGACCAAACATTACTTGATGGAGAAAATTTGAGATTTGAAGAGGAAGAACAATTTCTTATGTCAAGTTTAGAAGATAACATACCATTTCTTCAAATGCTACAAAATGTGGAAACCCCACAATTTTTTCCTTTGAAAGAACCAAACTTTCAAACACTTTTAAGGTTACAACATATGAAAAAACCATGGGAAGATTCAACCTTTATTCCTAGAATGGATTCACAACAAGTTCAAACAACATTGGAATTTGAAAGTTGTGTAACACAAGATATATTAGAGATGCAATCACCAGTGAAATCAGAAAGTAATGAACTTCTTCAACACAAAGTTTCTGCTTCATGCATTGAAAAAATGAGCTATGAATGTAACCAAGAACAAAGAAAAATAGTACAATCTTGTTCCAAATCTCAACTTGGAACAACAACTAAGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAGTCAAAGAATGACACACATTGCTGTTGAAAGAAATAGAAGACGCCAAATGAATGACCATCTCAGTGTTCTTAGGTCACTTATGCCTTCTTCATATATTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATAGATTTTGTGAAAGAGTTAGAACAATTACTTCAATCTCTTGAAGCACAAAAAAGGATAAAAAAGAATGAAGAATTTGGTTCCTCTTCATCATCATCACCAACTAGTTATGGAATGAAATTATCATCTTGTGAAGAAAATGAGGTAAAGGCAGAAAATAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACTCATGTGAACTTGAAAATTGAGTGCAAGAAAAGACATGGCCAATTGATAAAAGTTATTGTTGCTTTGGAGAATCTTAGGCTATCTATTCTTCACCTTAACATCACATCCTTTGATTCTTCTGTACTCTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCTGAAGCAGTTCATCAAATATTCAGCTACATTAATGGAAGCTAA 1101 0.3342 MERLQGPINSCLFGEVNCLDQTLLDGENLRFEEEEQFLMSSLEDNIPFLQMLQNVETPQFFPLKEPNFQTLLRLQHMKKPWEDSTFIPRMDSQQVQTTLEFESCVTQDILEMQSPVKSESNELLQHKVSASCIEKMSYECNQEQRKIVQSCSKSQLGTTTKEKRKRKRTRPVKNKEDVESQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRIKKNEEFGSSSSSSPTSYGMKLSSCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKRHGQLIKVIVALENLRLSILHLNITSFDSSVLYSLNLKIEEDCKLGTANDIAEAVHQIFSYINGS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00900 366 PANTHER TRANSCRIPTION FACTOR FAMA 104 360 IPR044283 GO:0003700|GO:0010052
Trre15g00900 366 Gene3D - 171 248 IPR036638 GO:0046983
Trre15g00900 366 SMART finulus 186 237 IPR011598 GO:0046983
Trre15g00900 366 Coils Coil 228 248 - -
Trre15g00900 366 CDD bHLH_AtFAMA_like 183 251 - -
Trre15g00900 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
Trre15g00900 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Trre15g00900 366 MobiDBLite consensus disorder prediction 151 182 - -
Trre15g00900 366 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Trre15g00900 366 FunFam Basic helix-loop-helix transcription factor 171 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00900 Trre-Chr15 6847481 6852140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00900 32 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.092 2.34e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00900 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00900 - - gmx:100789928 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00900 15 6847481 6852140 Trre15g00900 15 6847481 6852140 ECH