Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00895 ATGGATGCTGATCAACCCGCTCCTCCGCTAGTTAATTTTGTGAGGCCAAATTGCTTGTACACATCTATGTATCAACAACTTAGGGAAGAGCAAGTGAGGGAAGGCAACAAATGTGTGACATGTGGGAATGGTGGGCCTGGAGCCACATTCCCAGAGAACAAATGCATCAAGTGTCTTCTTTTAAAGTACAAAACCATGGAGAAATTTGTCAAGCTACTTTCAACTCCGGTGGTTCATAACTATAAGACTGAGATCTGTGTTAACTGGGAACAGCATGGAGACTGTGAATATGAGGATTGGTGTAAGTTTGCCCACGGGAATGCTGACCTTAGAGAACCTGGTTCTTTTCAGACCATGTGCGAGGCATATGGAATCATGTTCTTTGATGGATTTGGAAGGGTGGGTGCTGGTTGTTCTTTGTGA 423 0.4421 MDADQPAPPLVNFVRPNCLYTSMYQQLREEQVREGNKCVTCGNGGPGATFPENKCIKCLLLKYKTMEKFVKLLSTPVVHNYKTEICVNWEQHGDCEYEDWCKFAHGNADLREPGSFQTMCEAYGIMFFDGFGRVGAGCSL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00895 140 SMART c3hfinal6 80 107 IPR000571 GO:0046872
Trre15g00895 140 SUPERFAMILY CCCH zinc finger 78 111 IPR036855 GO:0046872
Trre15g00895 140 Gene3D - 77 112 - -
Trre15g00895 140 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872
Trre15g00895 140 FunFam zinc finger CCCH domain-containing protein 15-like 77 113 - -
Trre15g00895 140 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 106 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00895 Trre-Chr15 6743962 6745743 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g00895 zf-CCCH 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00895 - K18753 uma:UMAG_01649 50.0618