Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00893 ATGTCTCTTTCACAAGAAACCGTTGAAGGTGAAGCAAATCAACTTACACAAGGAGATATCCAAAATGAAGATGGCATTGTTTTTGCTTTAAACTTGATATCTTCGGTCATGCTTCCATTGACCGTCCGGTCCGCAGTTGAGCTTGGCATCTTTGACATTTTAGCAAAAGAAGGAAAAGACGCTAAGCTCTCTGCAAATGATATTGCAGTTAAAATTGGATCGAAAAATCCAGAAGCACCCACAATGTTAAATCGTCTTTTGAGGTTATTGGCCAGTCACTCCATGTTATATTGCTCGCTTTCTGAAGACGAACAAGGGCATTCGTCTCCTCAGAGGCTCTATAGCCTCGCCCCTATTTCTAAGTATTTTGTGACGGATGTTGATGGTGTGTCATTTGGACCAGCATTAAACTTACCTTTGGACAAAGTTTTCTTGGGAAGCTGGACCGAAATGAAAGGAGCAATTTTGGAAGGAGGTATACCATTCAACAGGGTTTATGGCATGCATGCATTTGAATATCCAGTTGTGGACCCAAGGTTTAATGATGTTTTCAACAATGCTATGCTCAATACTACCACTATTGTCATGAAGAGGATTCTTGAGATCTATGAGGGTTTTAAGAACATCAATAAACTTGTGGATGTTGGGGGTGGTCTTGGGATCAATATCAAGTTAATTACTTCTAAATATCCTCATATACAAGGTGTTAATTTTGACTTGCCACATGTCCTAGAACATGCACCTACCTATCCCGGTGTGACACATGTGGGAGGAGATATGTTTGAAAGTGTACCCGATGGAGATGTTATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACATTGCTTGAAGTTATTGAAGAATTGTAATAAAGCTATTCCAAAGGATGGAAAAGTGATTGTTGTGGATTCAATTATCCCTACTTTTCCGGAGAGTACAATGGTAGCTAAGACTGGTTTTCAAGCTGACCTCATGATGATGGCTCAAAATCCAGGAGGCAAAGAGAGAACCAAAGATGAGTTCATGGAATTGGCATTAGGATCTGGATTTAATGACATCAATTTTGCTTGCTATTTCTCTGGCTTTTGGGTTATGGAATTTATTAAGTAG 1116 0.3934 MSLSQETVEGEANQLTQGDIQNEDGIVFALNLISSVMLPLTVRSAVELGIFDILAKEGKDAKLSANDIAVKIGSKNPEAPTMLNRLLRLLASHSMLYCSLSEDEQGHSSPQRLYSLAPISKYFVTDVDGVSFGPALNLPLDKVFLGSWTEMKGAILEGGIPFNRVYGMHAFEYPVVDPRFNDVFNNAMLNTTTIVMKRILEIYEGFKNINKLVDVGGGLGINIKLITSKYPHIQGVNFDLPHVLEHAPTYPGVTHVGGDMFESVPDGDVIFLKWILHDWSDEHCLKLLKNCNKAIPKDGKVIVVDSIIPTFPESTMVAKTGFQADLMMMAQNPGGKERTKDEFMELALGSGFNDINFACYFSGFWVMEFIK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00893 371 SUPERFAMILY "Winged helix" DNA-binding domain 23 126 IPR036390 -
Trre15g00893 371 FunFam Caffeic acid O-methyltransferase 124 371 - -
Trre15g00893 371 PIRSF O-mtase 8 371 IPR016461 GO:0008168
Trre15g00893 371 FunFam Caffeic acid 3-O-methyltransferase 8 123 - -
Trre15g00893 371 PANTHER O-METHYLTRANSFERASE 32 352 IPR016461 GO:0008168
Trre15g00893 371 Gene3D - 8 123 IPR036388 -
Trre15g00893 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Trre15g00893 371 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Trre15g00893 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
Trre15g00893 371 Gene3D Vaccinia Virus protein VP39 125 371 IPR029063 -
Trre15g00893 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00893 Trre-Chr15 6709231 6711069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00893 13 371 Monolignol Biosynthesis Gene Families AT5G54160 51.381 1.87e-136 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00893 K13066 - gmx:100789402 552.362