Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00886 ATGCTTTTTTTGTCTTTAGGCCTCACAATTCTATCTCCCAAAAAATATCTTGATTTTGTGAGATCTAGAGGAATCAATCATTCTCCTGAGTCTCATAATTCATCATCTAGAGGATTAGGGTTCTTACACCAAGATGCAACAACAACCTCAAATTTCACAAATCAAACAAATTTAAAACAAATAGATTTCATGGAATTGTCACTTGGTACAAACAAAGATCCTAGTTCTTCTTCAAATACCAACAACAACCAACAAGAACAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAAAAATATTTTCCACTTGATTCAAACTCAAATGAAAAAGGTCTACTTCTAAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAATAGTAGTCAAAGTTATGTTATGACAAAAGGTTGGAGTCGTTTTGTTAAGGATAAAAAACTCGATGCCGGCGACATTGTTTCGTTTCAACGCGGTGTTGGCGAATTGTTTCGACATAGGTTGTTTATTGATTGGAAGAGAAGAACAAATCATCATAATCATCTTGATCCTTCTTCATCAACACTTTTTACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGTGGAGGTGCTAATAGTAGATTCTATTCACTTCCTTATCCTTCTCCTCCACAAAGTTTACAACATCATCAGCAACAAAATCATCATCAACATAATCATGACCCTTTACAGAATCAAATGAGTTATAATTATCAAATGTATCCATTTCATCAACATGGTGGTGGAAATGTTGGAAATACTTCAGAAAAAAGTTGTACAGCTGTTAAAGCTAGCAGCCACACCTTTCTTTGTTTGGTTCACAAACATGTTTTTAGTCATTGCAATAATTACAGCTGA 975 0.3354 MLFLSLGLTILSPKKYLDFVRSRGINHSPESHNSSSRGLGFLHQDATTTSNFTNQTNLKQIDFMELSLGTNKDPSSSSNTNNNQQEQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSNSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGELFRHRLFIDWKRRTNHHNHLDPSSSTLFTPFFLPNQQQYSIRWGGGANSRFYSLPYPSPPQSLQHHQQQNHHQHNHDPLQNQMSYNYQMYPFHQHGGGNVGNTSEKSCTAVKASSHTFLCLVHKHVFSHCNNYS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00886 324 FunFam B3 domain-containing protein 92 212 - -
Trre15g00886 324 Gene3D - 92 211 IPR015300 -
Trre15g00886 324 MobiDBLite consensus disorder prediction 248 269 - -
Trre15g00886 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 257 IPR044800 GO:0003700
Trre15g00886 324 MobiDBLite consensus disorder prediction 69 89 - -
Trre15g00886 324 SUPERFAMILY DNA-binding pseudobarrel domain 95 198 IPR015300 -
Trre15g00886 324 Pfam B3 DNA binding domain 99 200 IPR003340 GO:0003677
Trre15g00886 324 SMART B3_2 99 204 IPR003340 GO:0003677
Trre15g00886 324 ProSiteProfiles B3 DNA-binding domain profile. 99 199 IPR003340 GO:0003677
Trre15g00886 324 MobiDBLite consensus disorder prediction 69 97 - -
Trre15g00886 324 CDD B3_DNA 97 186 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00886 Trre-Chr15 6623560 6627191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00886 78 277 RAV Transcription Factor Family AT2G46870 56.338 1.18e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g00886 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00886 K09287 - gmx:100781424 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00886 15 6623560 6627191 Trre15g00886 15 6623560 6627191 ECH