Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00885 ATGTCCATAGTAGGGTTAAGGTTTGATCCATCAGATGAAGAACTTGTGAATCATTATTTGAAACACAAGATTTGTGGTAACGATTTTATGGCACGCAAAATAACTCAGATTGATCTTCTCAACTTTGCACCATGTGAATTACCAGCAAAGTTGAAGATGAAATCAGATGACAAAGAAGGGTTCTTCTTTACTTGTCTTGATTTGATGAAGATCAACAAAACTACAAGGTATAATAGAAAAGCCAAGGGTGGTTATTGGAAGATTAGTGGCAAACCCCGTATAATCAAGACAAAAGCCACTAAAGAAGTTATTGGAAAAAAACAGACTGTACTTTTCTATACTTCTCTTCATAAAAAGACCAACTGGGTTTATCATGAATATTCTGCAACTGGAGAAAATCTTCCTCCTAACAAGACAAATTTGGTCTTGGGTCGGTTAATGAAGCAAGGTGAACATGTAACTCATTCAAGTCATGTTTCATGCCATGTTTCTGCTCCTGACTTTGAAAAACAACCAATGATGGATTTAGCTCAAGATATTGGATATAGGTTCCGCCCCACAGAAGAAGAGCTTTTGAGTCATTACCTAAAACACAAGTTGGTCGGTAATGATTCTATGGTCAGCAACATTACTGAAATTCACCTTAATAATATTGAACCTTGGGAATTACCAGCAGCACTGCCCAAGATAACACCGAATGATTCCGAATGGTATTTTTTTACCACCGATGATTTGAAGTACAAGAAAGGCAGAAAGTGTAAAAGGTCTACCAATGCTGGTTATTGGAACCTAACCGGCATAACCCGTGAAATCAAGATCAAAGGAACCAACAACGTCATTGGCAGAAAAAAGATTTATGTTTTCTACAAGTATTGTGGTTCTCATGTTGAAAAGACTAATTATGTTATCCACCAATATCACGCAATTAAGGTTCCTGATAACAAGAGAAATTTTGTTTTGTGTCGATTGAAAGAAAAAACCGAAGTAACAAGAGTTGAATTGATGTATGACGACGAAGGGGCAAGTAGCCATGTTGCTCGAGGCAATGAGTTAGAAAGCATAGCAGCAACAGATTTAACTCCAAATGTATGTGGTTCCCCTGAAGTGAATATGGAATATTACTTATCATCACCTCATGAAGATGATTATAGCTTTCCTGCAGCTACTAATCAGACACCATATTTTGAAGGTTTAATATCTTCAAATTCATATTTTGAGACTGAAAACAGTAATGCAGGGTTTCCATTTGAAACTGATCATGAGAACAATGTTGACTATAACTCATTCTTCAATTCAAATTTAGAAGATGGTGATGTTTATATTAGTGAAGGAACAAGCTAA 1341 0.3609 MSIVGLRFDPSDEELVNHYLKHKICGNDFMARKITQIDLLNFAPCELPAKLKMKSDDKEGFFFTCLDLMKINKTTRYNRKAKGGYWKISGKPRIIKTKATKEVIGKKQTVLFYTSLHKKTNWVYHEYSATGENLPPNKTNLVLGRLMKQGEHVTHSSHVSCHVSAPDFEKQPMMDLAQDIGYRFRPTEEELLSHYLKHKLVGNDSMVSNITEIHLNNIEPWELPAALPKITPNDSEWYFFTTDDLKYKKGRKCKRSTNAGYWNLTGITREIKIKGTNNVIGRKKIYVFYKYCGSHVEKTNYVIHQYHAIKVPDNKRNFVLCRLKEKTEVTRVELMYDDEGASSHVARGNELESIAATDLTPNVCGSPEVNMEYYLSSPHEDDYSFPAATNQTPYFEGLISSNSYFETENSNAGFPFETDHENNVDYNSFFNSNLEDGDVYISEGTS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00885 446 SUPERFAMILY NAC domain 4 149 IPR036093 GO:0003677|GO:0006355
Trre15g00885 446 SUPERFAMILY NAC domain 175 325 IPR036093 GO:0003677|GO:0006355
Trre15g00885 446 Pfam No apical meristem (NAM) protein 4 128 IPR003441 GO:0003677|GO:0006355
Trre15g00885 446 Pfam No apical meristem (NAM) protein 181 307 IPR003441 GO:0003677|GO:0006355
Trre15g00885 446 Gene3D NAC domain 11 154 IPR036093 GO:0003677|GO:0006355
Trre15g00885 446 Gene3D NAC domain 187 330 IPR036093 GO:0003677|GO:0006355
Trre15g00885 446 ProSiteProfiles NAC domain profile. 2 149 IPR003441 GO:0003677|GO:0006355
Trre15g00885 446 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 155 - -
Trre15g00885 446 ProSiteProfiles NAC domain profile. 178 326 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00885 Trre-Chr15 6600649 6607585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00885 180 341 NAC Transcription Factor Family AT4G35580 43.114 5.03e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g00885 NAM 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00885 - - tpra:123886417 403.675