Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00884 ATGACAACTTCATACCCCATTCTTGATTTTCTTCCCGTTGGATTTAGATTCAGACCAACAGATGAAGAACTAATTAGCCATTATCTCAAAAACAAGTTACTTGGTAATGATTCTTTGTTAAACAATGTTATAGCTGAAGTTGATGTATGCAAGTTTGAACCTTGGGAATTACCAGATGTTTCAGTGATAAAATCAGATGACCCAGAATGGTTTTTCTTGTGTCCTTGTGATTACAAGTATTCTAAGAGTAGGAGTAAAAGGTTTAACAGGGCAACAAACTGTGGTTTCTGGAAAGCTACTGGAAATGATCGGAAGATCAAGATTAGGGGTACTAATAAAGTTATTGGGATAAAGAAAACTCTTGTTTACTATAATGGCCGTGTTCCTGGTGTTAAGAGCAATTGGGTAATTCATGAATATCATGATGTTACCATGGAAGAAAACAAGAGGACTTTTGTTTTAAGTCGCTTGATGAGGAAAGCTGAGACAAAAGCTGAAGAGGAAGCTGATATAATGATATGTGATGAAGGGGAGTCAAGTAGACACATGAGTTCCGACTATGAAAATCATGAAACAGTTGAAGGAATTCCAGATGTAATAAGTGGAACTTTGCCAGCAATAAATATGGAGTCAATATTTCAGGCACCTCATCAGGCAGAAAATTACTATCCTTTCTCAACACAACAGTCTTCAATCTCTGAAAATGAGCCGGAAGTATCGATCCCAAACTCGCAACTCAATGCCTATTTTAGAAATGTAAACATTGTTGATCAAAGTCCGTTCCAAACTCCTGAAGAGGAAGTTATGTTCGTCAATTCGATGCTTACTGACGGAGAATTTGTTACTAGTGAAAATAGAAGACATGCTTTTGTCAACAGTCCGGTCCGGTCTGAGTCATTGAGAATGGCTTACTATGAAAGCAGTGACACAGATGCCGAAGTAGTCTCTACGCCGTATGGCAGTCTTATGGATACTTCAATGGCGTCTCTTGACTATCTTAGTCCAGGCGAATACTATGCATCAAAACTGTTGAAATCAACGCATTTTAATGTTTATGGAAGCACATATTTTCCATCTTTTAACAATGGTGAAAGCGACAACAAAAAGGAGAGTACATTCCGAGATGATTTCGGCGGGGTGGAGGCATCCTCTTGTGACTCAACTGCAAATAAATTTTAA 1179 0.3808 MTTSYPILDFLPVGFRFRPTDEELISHYLKNKLLGNDSLLNNVIAEVDVCKFEPWELPDVSVIKSDDPEWFFLCPCDYKYSKSRSKRFNRATNCGFWKATGNDRKIKIRGTNKVIGIKKTLVYYNGRVPGVKSNWVIHEYHDVTMEENKRTFVLSRLMRKAETKAEEEADIMICDEGESSRHMSSDYENHETVEGIPDVISGTLPAINMESIFQAPHQAENYYPFSTQQSSISENEPEVSIPNSQLNAYFRNVNIVDQSPFQTPEEEVMFVNSMLTDGEFVTSENRRHAFVNSPVRSESLRMAYYESSDTDAEVVSTPYGSLMDTSMASLDYLSPGEYYASKLLKSTHFNVYGSTYFPSFNNGESDNKKESTFRDDFGGVEASSCDSTANKF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00884 392 Gene3D NAC domain 20 174 IPR036093 GO:0003677|GO:0006355
Trre15g00884 392 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Trre15g00884 392 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Trre15g00884 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 235 - -
Trre15g00884 392 Pfam No apical meristem (NAM) protein 12 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00884 Trre-Chr15 6586679 6589072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00884 8 164 NAC Transcription Factor Family AT4G35580 51.534 6.88e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g00884 NAM 6.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00884 - - psat:127076164 500.36