Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00880 ATGGCTTCTGCTTGTGCTTCTTCTGCCATTGCAGCTGTTGCCATCTCTACTCCAAGTTCCCAGAAGAATGGAACACCATTGGGAACCTCAAAAGCTTTTCTTGGGAGGAAACTGAGGGTGAACAACAACACATCAGCACCACTTAGAGTAAGGTCTACCACAACAGTGTGTGCAGCAGCTGAGCCTGATAGACCTTTGTGGTTTCCAGGAAGTGTCCCTCCTCCATGGCTTGATGGCAGTCTCCCAGGAGATTTTGGATTTGATCCTCTTGGACTTTCATCTGATCCCGAGAGTCTGAGATGGAATGTTCAAGCAGAGCTTGTACACTGCAGATGGGCAATGTTAGGTGCAGCAGGAATTTTCATTCCAGAATTCCTAACAAAGATTGGTATCTTGAACACACCTTCATGGTACACTGCTGGAGAGCAAGAGTATTTCACAGACACAACCACACTCTTCATAGTTGAGCTTATTTTCATCGGTTGGGCCGAGGGTAGGAGATGGGCTGACATCCTCAATCCAGGCTGTGTCAACACTGACCCTATCTTTCCAAACAACAAGCTTACTGGAACTGATGTAGGGTACCCTGGTGGACTTTGGTTTGATCCACTTGGTTGGGGAAGTGGTTCTCCTCAGAAGCTTAAGGAGTTGAGAACAAAGGAAATTAAGAATGGAAGATTGGCTATGTTGGCTGTTATGGGAGCTTGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGATAACCTCTTTGCTCATCTTGCCGATCCTGGTCATGCTACTATTTTCGCTGCATTCACTCCCAAGTGA 810 0.4667 MASACASSAIAAVAISTPSSQKNGTPLGTSKAFLGRKLRVNNNTSAPLRVRSTTTVCAAAEPDRPLWFPGSVPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00880 269 Gene3D Chlorophyll a/b binding protein domain 74 259 - -
Trre15g00880 269 FunFam Chlorophyll a-b binding protein, chloroplastic 74 259 - -
Trre15g00880 269 SUPERFAMILY Chlorophyll a-b binding protein 62 267 - -
Trre15g00880 269 Pfam Chlorophyll A-B binding protein 73 239 IPR022796 -
Trre15g00880 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 25 267 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00880 Trre-Chr15 6555065 6557428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00880 45 269 Chloroplast and Mitochondria Gene Families AT3G61470 88.496 4.51e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00880 K08908 - gmx:100802138 502.286