Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00874 ATGAAATCAAACCCTCCATCAACATCATCACAACAACTATTATTACCCTTTTACCCTTCTTCCAACAATTACATGTTTTTCTCCAAACTAATGTTCTTTTTCATAACAAAAACCTTTTTTTTATCCTTTTTTTTTGTTCATGTTTTTTCTTCTTGTAACCAACTAGACAAAGATTCTCTCTTGTCTTTCTCTTCAAAAATCTCATCTTTTTCATCTCTTAATTGGTCTTCTTCATCTGATTGTTGCAATTGGGAAGGTATAACTTGTGATCAAAATCATCAACATGTTACACAAATTTTTTTACCTTCTAGAGGTCTTAATGGTTTCATTGAGTTTTCTTCTATTACTTCACTTCAATCACTTTCTCATGTTAATCTTTCACATAATAAACTTCGTGGTAATCTTCAAAATCACTTTTTTTCACTTGTTAATCATGTATTAGTTCTTGATTTGAGTTATAATCATTTCTATGGTGGATTACCTAGTAGTAATGGTAGTGGAAATGGAAATAACAGTGTTGTTATTCAGGAATTGGATTTGTCTAGTAATTCATTCAATGGATCATTACCAGTTTCTTTGATTCAGATTCTTGCTGCAAATGGGAATTTGATTTCTTTCAATGTTAGTAACAACAGTTTCACAGGTCATATTCCATTTTCAAGCTTTTGTACTAATAATTCTGCTATAAGATTCTTGGATTTTTCATCCAATGATTTTGTTGGTGTTATTGATACTGGTTTAGGAGCATGTTCTAAGCTTGAGAGGTTTAGGGCAGGTTTCAATTTTCTAACAGGGAATATACCAGTTGATATTTATGATGCTGTTTCACTCACAGAAATATCAGTGCCACTTAATAGAATTAATGGAACAATTGATGATGGAATTGTTAACCTTACAAATCTCACAGTTTTGGAGCTTTATTCCAATAATTTAACAGGTTCTATTCCTAAGGAAATTGGTAAACTTTCCAAATTGGAAAGGCTACTTCTTCATGTCAACAATTTGACAGGTCCAATTCCATCGTCTTTGATGAATTGTCACAATCTTGTTGTGTTGAATTTAAGGGTCAATGATTTGGAAGGAAATCTTTCGGCGTTTAATTTCTCAGGACTTGTTAGACTTGTTACGCTTGATCTTGGCAACAATAGGTTCAGCGGTGTTTTACCGCCGAGCCTTTATGATTGTAAGTCACTTGCTGCATTAAGGCTTGCTTCTAATCAGCTTGAGGGACAGGTTTCATCTGAGATACTTGAACTTGAGTCTCTTTCGTTCTTATCGATTTCTAAAAACATGTTGAAGAATATCACTGGTGCTCTAAGAATACTCACTGGTCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTACAATGAAACGTTACCGAATGATGCGAACGTGATAGGCCCTGATGGGTTCCAAAAGATCCAAGTTTTAGGGTTAGGGGGTTGTAATTTCACAGGTCAAATACCAAGTTGGCTTGAAAGGCTGAAGAAGCTTGAGGCCGTGGACCTGTCCTATAATCTATTAAGTGGTTCGATTCCTCCTTGGTTAGGTACACTTTCTGAACTTTTCTACATAGACCTGTCTGTGAACCTACTTACAGGCCCGTTTCCGATAGAGCTTACTAAACTCCCGGCACTAGCATCACAACAAGCAAATGATAAAGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCTAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTTCCACCGGCAATTTATCTCGGAACCAATCACCTTAATGGCAGCATCCCGATTGAGGTTGGCCAATTGAAAGTTCTTCATACACTGGACCTGAAGTTAAACAACTTCTCTGGCAATATACCGGATCAACTTTCAAACTTGAATAACTTAGAGACACTAGACCTCTCGGGAAATCAACTATCAGGCGAAATTCCTGCTTCGCTCAATAATTTACATTTCTTGTCATTTTTCAGTGTAGCGAACAATAATCTTCAAGGTCAGATACCAACAGGTGGTCAGTTTAATACTTTTTCCAACTCCAGCTTTGAAGGAAATCCTCAATTGTGCGGTTTGGTTATTCAGCACCCTTGTTCTTCTCAAAAAAATGCTACTAGTACTTCAGTTAGTAGCAAATCCAGCAAAAAATTAATAGTCATACTTATTATTGCTGTCAGTTTCGGCATAGCTACTATGGTAACATTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAAGAGGAGATTCTGATAAGATTGAACTCGAATCAATTTCTCCGTACTCGAACAGCGGTGTTCATCCTGAAGTTGACAGAGAAGCTAGCCTAGTGGTATTGTTCCCCAACAAAAACAATGAAACCAAGGATCTTTGCATATTAGAGATTATAAAAGCTACTGAAAATTTCAGTCAGGCAAATATAGTAGGATGTGGCGGTTTCGGTTTGGTTTATAAAGCAACCTTTCAAAATGGAACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTAATGGAAAGGGAATTTAAAGCTGAAGTTGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTAGCATTGCAAGGCTACTGTGTGCATGATGGTTATCGACTACTAATATATAATTACATGGAGAATGGAAGTCTCGATTACTGGTTGCACGAAAAGTCTGACGGTGCGTCTCAACTTGATTGGCCGACTCGTTTGAAGATTGCACAAGGAGCAAGTTGTGGTTTGGCCTATTTGCATATAACATGTGAACCTCACATTGTGCACCGTGACATAAAATCAAGTAATATACTCCTTAACGACAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGTCGCGGTTGATTCTTCCGTATCAAACCCATGTTACAACTGAACTTGTAGGTACGTTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCGACTCTAAGAGGCGATGTGTACAGCTTTGGAGTTGTTTTGCTTGAGCTTCTCACCGGAAGGAGACCTATGGATGTATGCAAACCGAAAATTTCAAGAGAACTGGTTAGCTGGGTTCAACAGATGAAAATCGAAGGAAAACAAGAACAAGTATTTGACCCGAATCTACGAGGGAAAGGATTTGAAGCAGAGATGCTATACGTACTTGATGTGGCATGCATGTGTGTCAACATGAATCCTTTCAAGAGACCACGCATCAGAGAAGTTGTTGAATGGTTAAAAAATGTTGGATCAGAAAACCAGCTCAGAAATAACGATTAA 3276 0.3767 MKSNPPSTSSQQLLLPFYPSSNNYMFFSKLMFFFITKTFFLSFFFVHVFSSCNQLDKDSLLSFSSKISSFSSLNWSSSSDCCNWEGITCDQNHQHVTQIFLPSRGLNGFIEFSSITSLQSLSHVNLSHNKLRGNLQNHFFSLVNHVLVLDLSYNHFYGGLPSSNGSGNGNNSVVIQELDLSSNSFNGSLPVSLIQILAANGNLISFNVSNNSFTGHIPFSSFCTNNSAIRFLDFSSNDFVGVIDTGLGACSKLERFRAGFNFLTGNIPVDIYDAVSLTEISVPLNRINGTIDDGIVNLTNLTVLELYSNNLTGSIPKEIGKLSKLERLLLHVNNLTGPIPSSLMNCHNLVVLNLRVNDLEGNLSAFNFSGLVRLVTLDLGNNRFSGVLPPSLYDCKSLAALRLASNQLEGQVSSEILELESLSFLSISKNMLKNITGALRILTGLKKLSTLMLSKNFYNETLPNDANVIGPDGFQKIQVLGLGGCNFTGQIPSWLERLKKLEAVDLSYNLLSGSIPPWLGTLSELFYIDLSVNLLTGPFPIELTKLPALASQQANDKVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGTNHLNGSIPIEVGQLKVLHTLDLKLNNFSGNIPDQLSNLNNLETLDLSGNQLSGEIPASLNNLHFLSFFSVANNNLQGQIPTGGQFNTFSNSSFEGNPQLCGLVIQHPCSSQKNATSTSVSSKSSKKLIVILIIAVSFGIATMVTLLTLWILSKRRVNPRGDSDKIELESISPYSNSGVHPEVDREASLVVLFPNKNNETKDLCILEIIKATENFSQANIVGCGGFGLVYKATFQNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGASQLDWPTRLKIAQGASCGLAYLHITCEPHIVHRDIKSSNILLNDKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPMDVCKPKISRELVSWVQQMKIEGKQEQVFDPNLRGKGFEAEMLYVLDVACMCVNMNPFKRPRIREVVEWLKNVGSENQLRNND 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00874 1091 Gene3D Transferase(Phosphotransferase) domain 1 883 1091 - -
Trre15g00874 1091 ProSitePatterns Protein kinases ATP-binding region signature. 813 836 IPR017441 GO:0005524
Trre15g00874 1091 SUPERFAMILY Protein kinase-like (PK-like) 795 1078 IPR011009 -
Trre15g00874 1091 SUPERFAMILY L domain-like 475 693 - -
Trre15g00874 1091 SMART LRR_typ_2 298 322 IPR003591 -
Trre15g00874 1091 SMART LRR_typ_2 631 655 IPR003591 -
Trre15g00874 1091 SMART LRR_typ_2 118 142 IPR003591 -
Trre15g00874 1091 SMART LRR_typ_2 419 441 IPR003591 -
Trre15g00874 1091 SMART LRR_typ_2 498 522 IPR003591 -
Trre15g00874 1091 SMART LRR_typ_2 371 395 IPR003591 -
Trre15g00874 1091 ProSiteProfiles Protein kinase domain profile. 807 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00874 1091 SMART serkin_6 807 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00874 1091 Gene3D Phosphorylase Kinase; domain 1 774 882 - -
Trre15g00874 1091 Gene3D Ribonuclease Inhibitor 273 366 IPR032675 -
Trre15g00874 1091 PRINTS Leucine-rich repeat signature 631 644 - -
Trre15g00874 1091 PRINTS Leucine-rich repeat signature 374 387 - -
Trre15g00874 1091 SUPERFAMILY L domain-like 202 550 - -
Trre15g00874 1091 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 363 - -
Trre15g00874 1091 ProSiteProfiles Leucine-rich repeat profile. 633 656 IPR001611 GO:0005515
Trre15g00874 1091 Gene3D Ribonuclease Inhibitor 367 710 IPR032675 -
Trre15g00874 1091 SUPERFAMILY L domain-like 60 243 - -
Trre15g00874 1091 Gene3D Ribonuclease Inhibitor 173 272 IPR032675 -
Trre15g00874 1091 Gene3D Ribonuclease Inhibitor 55 172 IPR032675 -
Trre15g00874 1091 FunFam Leucine-rich repeat receptor-like protein kinase 883 1089 - -
Trre15g00874 1091 Pfam Protein tyrosine and serine/threonine kinase 811 1076 IPR001245 GO:0004672|GO:0006468
Trre15g00874 1091 Pfam Leucine rich repeat N-terminal domain 56 90 IPR013210 -
Trre15g00874 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Trre15g00874 1091 FunFam Tyrosine-sulfated glycopeptide receptor 1 368 706 - -
Trre15g00874 1091 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 276 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00874 Trre-Chr15 6515421 6518696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00874 27 705 Miscellaneous Gene Families AT1G17240 53.070 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre15g00874 Pkinase 4.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00874 - - gmx:100807989 1570.83