Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00873 ATGAAATCAAACCCTCCATCAACATCATCACAACAACTATTATTACCCTTTTACCCTTCTTCCAACAATTACATGTTTTTCTCCAAACTAATGTTCTTTTTCATAACAAAAACCTTTTTTTTATCCTTTTTTTTTGTTCATGTTTTTTCTTCTTGTAACCAACTAGACAAAGATTCTCTCTTGTCTTTCTCTTCAAAAATCTCATCTTTTTCATCTCTTAATTGGTCTTCTTCATCTGATTGTTGCAATTGGGAAGGTATAACTTGTGATCAAAATCATCAACATGTTACACAAATTTTTTTACCTTCTAGAGGTCTTAATGGTTTCATTGAGTTTTCTTCTATTACTTCACTTCAATCACTTTCTCATGTTAATCTTTCACATAATAAACTTCGTGGTAATCTTCAAAATCACTTTTTTTCACTTGTTAATCATGTATTAGTTCTTGATTTGAGTTATAATCATTTCTATGGTGGATTACCTAGTAGTAATGGTAGTGGAAATGGAAATAACAGTGTTGTTATTCAGGAATTGGATTTGTCTAGTAATTCATTCAATGGATCATTACCAGTTTCTTTGATTCAGATTCTTGCTGCAAATGGGAATTTGATTTCTTTCAATGTTAGTAACAACAGTTTCACAGGTCATATTCCATTTTCAAGCTTTTGTACTAATAATTCTGCTATAAGATTCTTGGATTTTTCATCCAATGATTTTGTTGGTGTTATTGATACTGGTTTAGGAGCATGTTCTAAGCTTGAGAGGTTTAGGGCAGGTTTCAATTTTCTAACAGGGAATATACCAGTTGATATTTATGATGCTGTTTCACTCACAGAAATATCAGTGCCACTTAATAGAATTAATGGAACAATTGATGATGGAATTGTTAACCTTACAAATCTCACAGTTTTGGAGCTTTATTCCAATAATTTAACAGGTTCTATTCCTAAGGAAATTGGTAAACTTTCCAAATTGGAAAGGCTACTTCTTCATGTCAACAATTTGACAGGTCCAATTCCATCGTCTTTGATGAATTGTCACAATCTTGTTGTGTTGAATTTAAGGGTCAATGATTTGGAAGGAAATCTTTCGGCGTTTAATTTCTCAGGACTTGTTAGACTTGTTACGCTTGATCTTGGCAACAATAGGTTCAGCGGTGTTTTACCGCCGAGCCTTTATGATTGTAAGTCACTTGCTGCATTAAGGCTTGCTTCTAATCAGCTTGAGGGACAGGTTTCATCTGAGATACTTGAACTTGAGTCTCTTTCGTTCTTATCGATTTCTAAAAACATGTTGAAGAATATCACTGGTGCTCTAAGAATACTCACTGGTCTCAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTACAATGAAACGTTACCGAATGATGCGAACGTGATAGGCCCTGATGGGTTCCAAAAGATCCAAGTTTTAGGGTTAGGGGGTTGTAATTTCACAGGTCAAATACCAAGTTGGCTTGAAAGGCTGAAGAAGCTTGAGGCCGTGGACCTGTCCTATAATCTATTAAGTGGTTCGATTCCTCCTTGGTTAGGTACACTTTCTGAACTTTTCTACATAGACCTGTCTGTGAACCTACTTACAGGCCCGTTTCCGATAGAGCTTACTAAACTCCCGGCACTAGCATCACAACAAGCAAATGATAAAGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCTAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTTCCACCGGCAATTTATCTCGGAACCAATCACCTTAATGGCAGCATCCCGATTGAGGTTGGCCAATTGAAAGTTCTTCATACACTGGACCTGAAGTTAAACAACTTCTCTGGCAATATACCGGATCAACTTTCAAACTTGAATAACTTAGAGACACTAGACCTCTCGGGAAATCAACTATCAGGCGAAATTCCTGCTTCGCTCAATAATTTACATTTCTTGTCATTTTTCAGTGTAGCGAACAATAATCTTCAAGGTCAGATACCAACAGGTGGTCAGTTTAATACTTTTTCCAACTCCAGCTTTGAAGGAAATCCTCAATTGTGCGGTTTGGTTATTCAGCACCCTTGTTCTTCTCAAAAAAATGCTACTAGTACTTCAGTTAGTAGCAAATCCAGCAAAAAATTAATAGTCATACTTATTATTGCTGTCAGTTTCGGCATAGCTACTATGGTAACATTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAAGAGGAGATTCTGATAAGATTGAACTCGAATCAATTTCTCCGTACTCGAACAGCGGTGTTCATCCTGAAGTTGACAGAGAAGCTAGCCTAGTGGTATTGTTCCCCAACAAAAACAATGAAACCAAGGATCTTTGCATATTAGAGATTATAAAAGCTACTGAAAATTTCAGTCAGGCAAATATAGTAGGATGTGGCGGTTTCGGTTTGGTTTATAAAGCAACCTTTCAAAATGGAACTAAGCTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTAATGGAAAGGGAATTTAAAGCTGAAGTTGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTAGCATTGCAAGGCTACTGTGTGCATGATGGTTATCGACTACTAATATATAATTACATGGAGAATGGAAGTCTCGATTACTGGTTGCACGAAAAGTCTGACGGTACGTTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCGACTCTAAGAGGCGATGTGTACAGCTTTGGAGTTGTTTTGCTTGAGCTTCTCACCGGAAGGAGACCTATGGATGTATGCAAACCGAAAATTTCAAGAGAACTGGTTAGCTGGGTTCAACAGATGAAAATCGAAGGAAAACAAGAACAAGTATTTGACCCGAATCTACGAGGGAAAGGATTTGAAGCAGAGATGCTATACGTACTTGATGTGGCATGCATGTGTGTCAACATGAATCCTTTCAAGAGACCACGCATCAGAGAAGTTGTTGAATGGTTAAAAAATGTTGGATCAGAAAACCAGCTCAGAAATAACGATTAA 3057 0.3732 MKSNPPSTSSQQLLLPFYPSSNNYMFFSKLMFFFITKTFFLSFFFVHVFSSCNQLDKDSLLSFSSKISSFSSLNWSSSSDCCNWEGITCDQNHQHVTQIFLPSRGLNGFIEFSSITSLQSLSHVNLSHNKLRGNLQNHFFSLVNHVLVLDLSYNHFYGGLPSSNGSGNGNNSVVIQELDLSSNSFNGSLPVSLIQILAANGNLISFNVSNNSFTGHIPFSSFCTNNSAIRFLDFSSNDFVGVIDTGLGACSKLERFRAGFNFLTGNIPVDIYDAVSLTEISVPLNRINGTIDDGIVNLTNLTVLELYSNNLTGSIPKEIGKLSKLERLLLHVNNLTGPIPSSLMNCHNLVVLNLRVNDLEGNLSAFNFSGLVRLVTLDLGNNRFSGVLPPSLYDCKSLAALRLASNQLEGQVSSEILELESLSFLSISKNMLKNITGALRILTGLKKLSTLMLSKNFYNETLPNDANVIGPDGFQKIQVLGLGGCNFTGQIPSWLERLKKLEAVDLSYNLLSGSIPPWLGTLSELFYIDLSVNLLTGPFPIELTKLPALASQQANDKVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGTNHLNGSIPIEVGQLKVLHTLDLKLNNFSGNIPDQLSNLNNLETLDLSGNQLSGEIPASLNNLHFLSFFSVANNNLQGQIPTGGQFNTFSNSSFEGNPQLCGLVIQHPCSSQKNATSTSVSSKSSKKLIVILIIAVSFGIATMVTLLTLWILSKRRVNPRGDSDKIELESISPYSNSGVHPEVDREASLVVLFPNKNNETKDLCILEIIKATENFSQANIVGCGGFGLVYKATFQNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPMDVCKPKISRELVSWVQQMKIEGKQEQVFDPNLRGKGFEAEMLYVLDVACMCVNMNPFKRPRIREVVEWLKNVGSENQLRNND 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00873 1018 ProSitePatterns Protein kinases ATP-binding region signature. 813 836 IPR017441 GO:0005524
Trre15g00873 1018 FunFam Tyrosine-sulfated glycopeptide receptor 1 368 706 - -
Trre15g00873 1018 SMART LRR_typ_2 298 322 IPR003591 -
Trre15g00873 1018 SMART LRR_typ_2 631 655 IPR003591 -
Trre15g00873 1018 SMART LRR_typ_2 118 142 IPR003591 -
Trre15g00873 1018 SMART LRR_typ_2 419 441 IPR003591 -
Trre15g00873 1018 SMART LRR_typ_2 498 522 IPR003591 -
Trre15g00873 1018 SMART LRR_typ_2 371 395 IPR003591 -
Trre15g00873 1018 Gene3D Ribonuclease Inhibitor 367 710 IPR032675 -
Trre15g00873 1018 SUPERFAMILY L domain-like 58 306 - -
Trre15g00873 1018 Gene3D Phosphorylase Kinase; domain 1 774 882 - -
Trre15g00873 1018 ProSiteProfiles Protein kinase domain profile. 807 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00873 1018 Pfam Protein tyrosine and serine/threonine kinase 900 1003 IPR001245 GO:0004672|GO:0006468
Trre15g00873 1018 Pfam Protein tyrosine and serine/threonine kinase 811 897 IPR001245 GO:0004672|GO:0006468
Trre15g00873 1018 SMART serkin_6 807 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00873 1018 PRINTS Leucine-rich repeat signature 631 644 - -
Trre15g00873 1018 PRINTS Leucine-rich repeat signature 374 387 - -
Trre15g00873 1018 Pfam Leucine rich repeat N-terminal domain 56 90 IPR013210 -
Trre15g00873 1018 Gene3D Ribonuclease Inhibitor 271 366 IPR032675 -
Trre15g00873 1018 Gene3D Ribonuclease Inhibitor 173 270 IPR032675 -
Trre15g00873 1018 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 898 1006 - -
Trre15g00873 1018 SUPERFAMILY L domain-like 225 551 - -
Trre15g00873 1018 Gene3D Transferase(Phosphotransferase) domain 1 883 1018 - -
Trre15g00873 1018 SUPERFAMILY L domain-like 475 693 - -
Trre15g00873 1018 SUPERFAMILY Protein kinase-like (PK-like) 794 1009 IPR011009 -
Trre15g00873 1018 Gene3D Ribonuclease Inhibitor 55 172 IPR032675 -
Trre15g00873 1018 ProSiteProfiles Leucine-rich repeat profile. 633 656 IPR001611 GO:0005515
Trre15g00873 1018 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00873 Trre-Chr15 6515421 6518696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00873 27 705 Miscellaneous Gene Families AT1G17240 53.070 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre15g00873 PK_Tyr_Ser-Thr 3.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00873 - - gmx:100781943 1222.99