Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00861 ATGGCAACAAAAACAATCCTCAAATTCTTCACAATAATTGCTTTCATGGCAAATTCATTTCAAGAAAACATATTCAAGATTCTTCATAAACTCTACAAGAATTATTTCTATGTTGGTGGTTCAATGAAGGAAATAGATCAAAGTGAAAGTGAATGTTGTTCAATTTGTTTAAACCAAATGTGTAAAGGAGAAAAAGTTAGATTATTACCTTTATGTAATCATAGATATCATGCTGATTGTATTGGTGCTTGGTTGAAGAACAATACAACATGTCCTCTTTGTAGAAGCAAAATCAGTGACCATAGTATTAATCAGAATCAACAAAAACAGGTTAAACCTTTTGGAGAATCTATGGTTGATCTTATACAAAGTTTCTCTGATGTAATTGTAGCTATTCTTTATATGATTCTTCCATCTAGTATCACTGAAAGTTTCCCTATTATTCATTGA 450 0.3 MATKTILKFFTIIAFMANSFQENIFKILHKLYKNYFYVGGSMKEIDQSESECCSICLNQMCKGEKVRLLPLCNHRYHADCIGAWLKNNTTCPLCRSKISDHSINQNQQKQVKPFGESMVDLIQSFSDVIVAILYMILPSSITESFPIIH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00861 149 SMART ring_2 53 94 IPR001841 -
Trre15g00861 149 SUPERFAMILY RING/U-box 42 101 - -
Trre15g00861 149 CDD RING-H2_PA-TM-RING 52 95 - -
Trre15g00861 149 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
Trre15g00861 149 PANTHER RING-H2 FINGER PROTEIN ATL16 44 112 IPR044600 GO:0016567|GO:0016740
Trre15g00861 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 106 IPR013083 -
Trre15g00861 149 Pfam Ring finger domain 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00861 Trre-Chr15 6385185 6385634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00861 53 109 Carbohydrate Esterase AT3G14320 37.143 5.02e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00861 - - tpra:123883175 285.804