Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00860 ATGGGTGCAACTGCAATATCAGGAACAAGTGATTCATTGGGTGAGTCTAATGCAATTGAATTAACAGGAAAAATCATGGTGGTAGCTATAATTTTTCTGTTCATGGTCGTTATGTTTGTTCTAATGCTTCATCTTTATGCTAAATGGTTTTGGTGGCGTTTTGAGGAAAGAACTGTTCCTCAACCACCAAACCGCCGTCGACGTCGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTCTATGGAACTCACCAAATTGGACTTGAAGTTTCAATTCTTAAGTCTTTACCTGTTTTGGTTTTTAAACCTGAAGATTTCAAAGATGGTTTAGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAACAAGACTTTTACCTAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTATTGAATCCTCAAATGGTGAAGAGATCAATGTGTTAGTTTCATCAGAAAGTGATGAAAATTTGAGTCCTATGAATGATTTAGAGTCTTCAAATTTTCCTACAAATGTTTTGGTTTGGGGGAATCATCAAACACAAGTTAATTCTTCTAGTGTTTGTTTGGATGAAGGAAGTTCTCAACAACAATCATATTCAACATCATCATCATCATCATCTTTAGATGATGAAAATGTTGGCAATAGTAGATGTAATAATGGAAATGGAATGTTGGTGATTGATATACCATTACAAAATGAGTTTAGTTCTTCTTCTATGTCATCTTGTGATAGTAGGTGTGTTGAAGATGAAATGAAATCACCAATGTCAACAAGGTTGAGATCATTTAAGAGGCTTTTAAGTAGGGACAAAAAGTTAAGTCCTTCAAGTCCTAGTTCTATGGATGTCGAACAAGGCTCGAGCTAA 939 0.3525 MGATAISGTSDSLGESNAIELTGKIMVVAIIFLFMVVMFVLMLHLYAKWFWWRFEERTVPQPPNRRRRRRRFVFAPGQDPVVYGTHQIGLEVSILKSLPVLVFKPEDFKDGLECAVCLCDIVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSIESSNGEEINVLVSSESDENLSPMNDLESSNFPTNVLVWGNHQTQVNSSSVCLDEGSSQQQSYSTSSSSSSLDDENVGNSRCNNGNGMLVIDIPLQNEFSSSSMSSCDSRCVEDEMKSPMSTRLRSFKRLLSRDKKLSPSSPSSMDVEQGSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00860 312 MobiDBLite consensus disorder prediction 296 312 - -
Trre15g00860 312 SUPERFAMILY RING/U-box 94 162 - -
Trre15g00860 312 MobiDBLite consensus disorder prediction 219 243 - -
Trre15g00860 312 MobiDBLite consensus disorder prediction 270 295 - -
Trre15g00860 312 SMART ring_2 114 155 IPR001841 -
Trre15g00860 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 263 - -
Trre15g00860 312 Pfam Ring finger domain 113 156 IPR001841 -
Trre15g00860 312 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Trre15g00860 312 FunFam RING-H2 finger protein ATL3 82 161 - -
Trre15g00860 312 CDD RING-H2_EL5-like 113 156 - -
Trre15g00860 312 MobiDBLite consensus disorder prediction 261 312 - -
Trre15g00860 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00860 Trre-Chr15 6375676 6376614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00860 20 295 C3H Transcription Factor Family AT1G53820 44.371 2.52e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00860 - - cam:101491184 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00860 15 6375676 6376614 Trre15g00860 15 6375676 6376614 ECH