Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00853 ATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAACAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTGTAGCCATTGTTGTATCAACAAAAAATTCCAACAAAACCAAAAACAACAACATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCACACACCATTATAAAAAATGCTTGCACAACCACACTCTACCCTGAACTATGTTTCTCAGCCTTAGCCTCTGAACCAAACATAACTCACAAAGTCACCCACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACAAGAGCTGTCGAACACAATTACTTCACCGTCGAAAAACTCCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACCGCTCTTCATGATTGTTTAGAAACCATTGATGAAACACTAGATGAACTCAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACGCTCATAAGTTCCGCCATTACTAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGCTCTAGAAGCGGGACAAGTCCATGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCGGAATTTGAACAAACCAACACGGTGTTGGGAAGTGGCAATAGGAAATTATTGGAAGACGAAAGTGGGGTGCAGTGGCCGGAGTGGATATCAGCAGGGGACAGGAGACTACTTCAAGGGGCAGCGGTGAAGGCGGATGTGGTAGTGGCAGCGGACGGAAGTGGTAATTTTAAGACGGTATCCGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTTATTAAAATAAAAGCTGGGGTGTATAAAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAACTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACTACTTTTCACTCTGCCACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCAGGCCCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTTTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCCGGCACCGTCGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCTGATTCAGGACAAAAAAATATGGTCACGGCGCAAGGTAGGGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTGCTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGAGAATATCAAAATACTGGGCCTGGTGCTGGTACTTCTAATAGGGTTACTTGGAAAGGATTTAAGGTCATTACTGCTGCTGCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA 1764 0.4076 MNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIVAIVVSTKNSNKTKNNNIASSSLSLSHHSHTIIKNACTTTLYPELCFSALASEPNITHKVTHHKDVISLSLNITTRAVEHNYFTVEKLLLRKTLTKREKTALHDCLETIDETLDELKEAEEDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKALEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQTNTVLGSGNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYKENVDVPKKVTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPAGWHEWNGNFALNTLVYREYQNTGPGAGTSNRVTWKGFKVITAAAEAQSFTAGNFIGGSSWLGSTGFPFSLGL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00853 587 SMART PMEI_2 62 221 IPR006501 GO:0004857
Trre15g00853 587 SUPERFAMILY Pectin lyase-like 271 586 IPR011050 -
Trre15g00853 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 226 IPR035513 -
Trre15g00853 587 Coils Coil 136 156 - -
Trre15g00853 587 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Trre15g00853 587 Pfam Pectinesterase 276 572 IPR000070 GO:0030599|GO:0042545
Trre15g00853 587 NCBIfam pectinesterase inhibitor domain 55 225 IPR006501 GO:0004857
Trre15g00853 587 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857
Trre15g00853 587 FunFam Pectinesterase 270 587 - -
Trre15g00853 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 226 IPR035513 -
Trre15g00853 587 Gene3D - 270 587 IPR012334 -
Trre15g00853 587 PANTHER PECTINESTERASE 34 577 - -
Trre15g00853 587 FunFam Pectinesterase 63 226 - -
Trre15g00853 587 CDD PMEI-like_3 70 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00853 Trre-Chr15 6324417 6331566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00853 53 587 Carbohydrate Esterase AT3G14310 73.866 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00853 K01051 - pvu:PHAVU_010G123100g 911.753