Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00852 ATGATGAACAAAATAAAACAATCTCTTGCCGGAATCTCGAATTCCGGCAACAAGAAAAAACTCTTCATCTCCCTTTTCACAACTCTTCTCATTGTAGCTTCCATTGTAGCCATTGTTGTATCAACAAAAAATTCCAACAAAACCAAAAACAACAACATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCACACACCATTATAAAAAATGCTTGCACAACCACACTCTACCCTGAACTATGTTTCTCAGCCTTAGCCTCTGAACCAAACATAACTCACAAAGTCACCCACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACAAGAGCTGTCGAACACAATTACTTCACCGTCGAAAAACTCCTCTTGCGAAAAACTCTCACAAAAAGAGAGAAAACCGCTCTTCATGATTGTTTAGAAACCATTGATGAAACACTAGATGAACTCAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGACACTTTATCAACATGCTAATGATCTTAAAACGCTCATAAGTTCCGCCATTACTAACCAGGTAACTTGCTTGGATGGATTCTCACACGATGGTGCCGATAAGCTTGTAAGGAAGGCTCTAGAAGCGGGACAAGTCCATGTGGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAACATGACGGACACAGATATAGCGGAATTTGAACAAACCAACACGGTGTTGGGAAGTGGCAATAGGAAATTATTGGAAGACGAAAGTGGGGTGCAGTGGCCGGAGTGGATATCAGCAGGGGACAGGAGACTACTTCAAGGGGCAGCGGTGAAGGCGGATGTGGTAGTGGCAGCGGACGGAAGTGGTAATTTTAAGACGGTATCCGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATTTGTTATTAAAATAAAAGCTGGGGTGTATAAAGAAAATGTGGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAACTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACTACTTTTCACTCTGCCACTGTTGCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCAGGCCCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTTTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCCGGCACCGTCGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCTGATTCAGGACAAAAAAATATGGTCACGGCGCAAGGTAGGGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTGCTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGAGAATATCAAAATACTGGGCCTGGTGCTGGTACTTCTAATAGGGTTACTTGGAAAGGATTTAAGGTCATTACTGCTGCTGCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGGTTTCCTTTCTCTCTTGGGCTATAA 1767 0.4075 MMNKIKQSLAGISNSGNKKKLFISLFTTLLIVASIVAIVVSTKNSNKTKNNNIASSSLSLSHHSHTIIKNACTTTLYPELCFSALASEPNITHKVTHHKDVISLSLNITTRAVEHNYFTVEKLLLRKTLTKREKTALHDCLETIDETLDELKEAEEDLVLYPTKKTLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKALEAGQVHVEHMCSNALAMIKNMTDTDIAEFEQTNTVLGSGNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRFVIKIKAGVYKENVDVPKKVTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPAGWHEWNGNFALNTLVYREYQNTGPGAGTSNRVTWKGFKVITAAAEAQSFTAGNFIGGSSWLGSTGFPFSLGL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00852 588 Gene3D - 271 588 IPR012334 -
Trre15g00852 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 227 IPR035513 -
Trre15g00852 588 PANTHER PECTINESTERASE 35 578 - -
Trre15g00852 588 Pfam Pectinesterase 277 573 IPR000070 GO:0030599|GO:0042545
Trre15g00852 588 Coils Coil 137 157 - -
Trre15g00852 588 SMART PMEI_2 63 222 IPR006501 GO:0004857
Trre15g00852 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Trre15g00852 588 NCBIfam pectinesterase inhibitor domain 56 226 IPR006501 GO:0004857
Trre15g00852 588 SUPERFAMILY Pectin lyase-like 272 587 IPR011050 -
Trre15g00852 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 227 IPR035513 -
Trre15g00852 588 CDD PMEI-like_3 71 227 - -
Trre15g00852 588 FunFam Pectinesterase 64 227 - -
Trre15g00852 588 FunFam Pectinesterase 271 588 - -
Trre15g00852 588 Pfam Plant invertase/pectin methylesterase inhibitor 67 222 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00852 Trre-Chr15 6324417 6331569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00852 54 588 Carbohydrate Esterase AT3G14310 73.866 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00852 K01051 - pvu:PHAVU_010G123100g 911.753