Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00851 ATGGATACTATGCAATCTTTCAAAGGTTATGGTAAAGTAGACGAAATAGAACAACAAGCATTTCAGAAAAACACACGTAAGCGCATCACAACCATAATCATCTCCGCCATTATTCTATTGGCGGTTATCATTGCTGCAGTTGCAGGAGTTCTCATACACAAGCGCAACACCTCATCCTCTTCTGACTTGCTCCCTAACACTCAGTTAACACCCGCCACGTCACTCAAAGCAGTTTGCGATGCAACTCAATATCCTAACTCGTGCTTCGCAGCAATCTCATCTCTTCCAGATTCCAACACCACTGATCCTGAAAAACTTTTCAAACTCTCTCTCAAAGTCGCCATTGATGAACTCTCAAATCTCACGCGCGGATTCAGTAAAAAAATCCAAGTGAGCGGTGACACGCGCCTTAAGAAAGCGATTGAAGTTTGCGGTTCGGTTTTGAACGATTCGTTAGATCGGCTTAACGATTCAATGTCGACGATTGTTTCTGGTGAGAAGATTCTTTCTCCGACGAAGATTCGCGATGTTGAGACGTGGATAAGTGCGGCGTTAACGGATCATGACACGTGTCTGGATGCTGTTGGTGAATTGAACTCAACCGCTGCCAAAAAACTGCGTCTTGAAATTGAAACCGCGATGAAAAACTCGACGGAATTTGCGAGTAACAGTTTAGCGATTGTGACGAAGGTGATAAGGTTACTATCAAATTTCGAGGTTCCGAATCATAACCGGAGATTGCTCAGTGATTTTCCGGAGTGGTTGGGAGCGGCGGAGAGGAGGCTTCTTGCGGCGGAGGGGAATGGGACTGCAGTTACGGCGGATACGCCTGATGCGGTGGTGGCGAAGGATGGAAGTGGACAGTATAAGACGATAGCGGATGCGTTGAAGATGGTACCGAAGAAGAGTGAGAAGAGATTTGTGGTGTATGTGAAGAAAGGGGAATATGTAGAGAATATTGATTTGGATAAGAATACATGGAATGTGATGATTCGCGGTGATGGTATGACGGAAACCGTCGTAACTGGTAGCCGGAATTACATTGACGGTACACCTACTTTTGAGACTGCAACTTTTGCTGTTAAAGGCAAGGGATTCATTGCTAAAGACATACAATTCAAGAACTCTGCAGGTGCAGCTAAGCACCAGGCTGTTGCATTTCGATCGGGCTCGGATCAATCTGTGTTCTACAGGTGTTCATTTGTGGGATTTCAGGATACCCTTTATGCACATTCAAACCGTCAATTCTACCGTGACTGTGACATTACAGGTACCATAGACTTCATATTCGGAAATGCAGCTGTTGTGTTCCAAAATTGCAAAATCATGCCTAGGCAACCACTACCAAACCAGTTCAACACCATCACAGCTCAGGGTAAGAAGGATCCTAATCAAGTCACTGGAATTGTGATCCAGAAATCAACTATCACTACACTACCTAATGAAAATCTCCAAGGAGTTAAAACTTACCTTGGTAGACCATGGAAAGATTTCTCCACTACTATTATCATGAAATCAGATATTGGGTCATTCTTGAATCCAGTAGGGTGGATAAGTTGGGTTTTCAATGTGGATCCTCCAAGTAGCATCCTCTATGCTGAATACCAGAACACTGGGCCAGGAGCTGCAGTTGACCAGAGAGTCAAATGGGCCGGTTATAAGCCCACTCTCGGAGACGAAGAAGCTATCAAGTTCACTGTGGATTCCTTTATCCAGGGCCCAGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGATTCTACCCTATAA 1767 0.4477 MDTMQSFKGYGKVDEIEQQAFQKNTRKRITTIIISAIILLAVIIAAVAGVLIHKRNTSSSSDLLPNTQLTPATSLKAVCDATQYPNSCFAAISSLPDSNTTDPEKLFKLSLKVAIDELSNLTRGFSKKIQVSGDTRLKKAIEVCGSVLNDSLDRLNDSMSTIVSGEKILSPTKIRDVETWISAALTDHDTCLDAVGELNSTAAKKLRLEIETAMKNSTEFASNSLAIVTKVIRLLSNFEVPNHNRRLLSDFPEWLGAAERRLLAAEGNGTAVTADTPDAVVAKDGSGQYKTIADALKMVPKKSEKRFVVYVKKGEYVENIDLDKNTWNVMIRGDGMTETVVTGSRNYIDGTPTFETATFAVKGKGFIAKDIQFKNSAGAAKHQAVAFRSGSDQSVFYRCSFVGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQVTGIVIQKSTITTLPNENLQGVKTYLGRPWKDFSTTIIMKSDIGSFLNPVGWISWVFNVDPPSSILYAEYQNTGPGAAVDQRVKWAGYKPTLGDEEAIKFTVDSFIQGPEWLPNAAVQFDSTL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00851 588 FunFam Pectinesterase 71 232 - -
Trre15g00851 588 Pfam Plant invertase/pectin methylesterase inhibitor 75 227 IPR006501 GO:0004857
Trre15g00851 588 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Trre15g00851 588 Gene3D - 273 588 IPR012334 -
Trre15g00851 588 Pfam Pectinesterase 278 573 IPR000070 GO:0030599|GO:0042545
Trre15g00851 588 PANTHER PECTINESTERASE 36 578 - -
Trre15g00851 588 NCBIfam pectinesterase inhibitor domain 63 230 IPR006501 GO:0004857
Trre15g00851 588 SMART PMEI_2 70 227 IPR006501 GO:0004857
Trre15g00851 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 231 IPR035513 -
Trre15g00851 588 FunFam Pectinesterase 272 588 - -
Trre15g00851 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 231 IPR035513 -
Trre15g00851 588 SUPERFAMILY Pectin lyase-like 274 585 IPR011050 -
Trre15g00851 588 CDD PMEI-like_3 77 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00851 Trre-Chr15 6314759 6317834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00851 1 582 Carbohydrate Esterase AT1G53840 57.238 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00851 - - gmx:100784642 842.417