Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00842 ATGTTGCAGTTTCATCCTCAAGGTGTTTCTAAACAGACTTGTACTGTTCTTGCTGTTACTTCTGCTACAAGTTCTGTTGACCAGAAGCTGAAGCAGCCACAGAATCATCTCATATACCCTTTCCCTGAGTTGGTTTCTTCGGGGCGTCTTGAGGTTCAAACTCTCTGCGATCCGGAAAAGGAACAGTTTCGTAAAGTTCTTGAATCGTATCAGCCAAGTTTTGTTTACTTACAAGGAGAGCAGTTAGTGAATGAGGAAGTTGGTTCACTGGTTTGGCAAGGTGTGGAATTATCCATTCCTGAAGATTTATCAGAGCTCTTCGGTACTACATTGCCAACGGTTGTTTATCTAGAAATCCCAAATGGAGAAATTTTTGCAGAGGCCCTTCGTCTTAAGGGAATCCCGTATGTTGTATTTTGGAAAAATGCCTTTTCTCAATATGCTGCCTGCCATTTTCGTCAAGCATTTTTTTCAGTGGTGCAGAGTTCATGTACACATACATGGGATGCTTTCCACCTTGCACGTGCCTCTTTCGAGCTTTACTGTGTTCAAAACAGTCAAGTACTTCCTAATGATAGCAATGATGCTGATAGCGATATGGGGCCACACCTTCTTGGTGACTGCCTCAAAATTAATGTTGACCCTCCAGAGATGGGTGAAGAAGAAGATGAAGATGATGAAGAAAGTTCCTCAGGCAATCTTCCTTCTATACAGATTCATGATGATGAAGTGAATTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGAGTCTTTACTGAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCATGGCAAGTATAGTGCCCCTCCACCACCTCTTCAGGCAGCTACTTTTTCACGCGGCGTTGTGACCATGCGATGTGATATATCAACCTGCAGTTCTGCACATATCTCACTTCTAGTATCTGGCAGTCCACAAGCCTGTTTTAATGATCAGCTCTTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAAATAGTTCGCGCACAACTCAACAGTGAAGCAAACACAGAGATTATATCTGAACCTCGCAGATCTGCTTCAATAGCTTGTGGAGCAACTATATTTGAAGTTAGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGCGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGGTTGCCTGTAGCCTCTTTTGAGAAAGATGATGCCGAGCGCTTACTTTTCTTCTATCAAAGCTCCGAGAAAGATGGATGTGAAAATGGCAATTTAGTTTTCAGCAATCCCCCTATTTGGTTGAAGCCTCCCCCTCCTACAAGAAAGAGGTGCGAATCAAGCCAAGGGGATAGCCCTGACGTACACGATGGTGTCTTTGCAGGGCAGGGTGCTGTTAAAAATGTATATGAAGAGGATAAGGATAGGAAAATGGTGAATGGGGTTAGCACACCATTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGGCACCTTTTCGTGGACCTTCTGACATAAATGGTTTTGGTGGTGCCCATGTTGAGGCTAATGTGCCACTCGTCCCTATGAAGCGTAGTAGTATTGGATCATCATCTGCCACGCAGAGAAAATCATTTTCAAGCTCATCTCATTCTAAGCAGGTTATTTCATTGAATCCATTACCGTTGAAGAAACATGGCTGTAGCAGAGGCCCGGTACAGACTTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCTCAAGGAGGGCTTTCCGAGTTCCCTGATGCCATTCTGAATGGCAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGGTTACAAGGGGAGGATTTCACGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCGAAGATGGGAAATTACACATCAACGAATAGAATGACTGGAGTTGGAAATACACTCAAGAGACATTATGAAACTTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCTGCTGGAGATTGGGTGAACTGTGGCATATGTGGCGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCTAAGACAGATGGGCTGGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAAAAACAAAGTGTTGCTAATGGATATTCTCAAGGGTCAATGTCATCACGACCCCTTTGA 2358 0.4326 MLQFHPQGVSKQTCTVLAVTSATSSVDQKLKQPQNHLIYPFPELVSSGRLEVQTLCDPEKEQFRKVLESYQPSFVYLQGEQLVNEEVGSLVWQGVELSIPEDLSELFGTTLPTVVYLEIPNGEIFAEALRLKGIPYVVFWKNAFSQYAACHFRQAFFSVVQSSCTHTWDAFHLARASFELYCVQNSQVLPNDSNDADSDMGPHLLGDCLKINVDPPEMGEEEDEDDEESSSGNLPSIQIHDDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKYSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSPQACFNDQLLENHIKNEIIEKSQIVRAQLNSEANTEIISEPRRSASIACGATIFEVSMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSSEKDGCENGNLVFSNPPIWLKPPPPTRKRCESSQGDSPDVHDGVFAGQGAVKNVYEEDKDRKMVNGVSTPLTPARQRLKVSAMRPIPHVRRHRMAPFRGPSDINGFGGAHVEANVPLVPMKRSSIGSSSATQRKSFSSSSHSKQVISLNPLPLKKHGCSRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMGNYTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00842 785 CDD PHD_ARID4_like 709 760 - -
Trre15g00842 785 CDD ARID 601 699 - -
Trre15g00842 785 SMART ARID_2 596 699 - -
Trre15g00842 785 MobiDBLite consensus disorder prediction 557 577 - -
Trre15g00842 785 ProSiteProfiles ARID domain profile. 599 703 IPR001606 GO:0003677
Trre15g00842 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 782 IPR042293 -
Trre15g00842 785 SMART bright_3 600 704 IPR001606 GO:0003677
Trre15g00842 785 SUPERFAMILY ARID-like 599 714 IPR036431 GO:0003677
Trre15g00842 785 SUPERFAMILY FYVE/PHD zinc finger 695 763 IPR011011 -
Trre15g00842 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 766 IPR013083 -
Trre15g00842 785 Gene3D - 596 702 IPR036431 GO:0003677
Trre15g00842 785 MobiDBLite consensus disorder prediction 457 476 - -
Trre15g00842 785 MobiDBLite consensus disorder prediction 215 236 - -
Trre15g00842 785 Pfam ARID/BRIGHT DNA binding domain 602 699 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00842 Trre-Chr15 6234968 6243365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00842 4 774 ARID Transcription Factor Family AT3G43240 60.000 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre15g00842 ARID 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00842 - - gmx:100816540 1345.87