Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00840 ATGGACAATGTTCATGAAAGAAAATCAAGTTCTTCTTCAAATCACAAATGGCGGCTTTTCACTTCATGCATTCCATGTTTTACTAGTAAACACTCGAAGAAAAATATTTCTGAGGGCATGGAGGGAAATTCATCTTCTACAAAACTTGAAGAACAAATTTTAGAAGACATTTTCCACGATACTGAAGAAAATATTTTAGAAGGTGAATCTTCTTCATCTCAATTGAAACAACTCTATTGTGCTATCTGCATGGAAGATAAATATGTTAAAGAAATGTTCGAAAACCAAAATTGTTCACATTCTTTTTGTAAAGATTGTGTTGGAAGTTATTTAGTTGCAAAAATTCAAGAGAATATAGCAAATATAAAATGTCCTCATCCAAAATGTAAGGTTAATTTGAACCCTCAACATTGTACTACAATTATACCAAAGGATATGTTTGAAAGATGGGAAAGTACAATTGTTGAGAATTTGGTATTGGGATCACAAAAGTTTTATTGTCCTTTTAAGGATTGTTCAGCTTTGTTGGTGAATGATGGAAAGGAAGTTGTGACGGCTTCAGAATGTCCGAATTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACACCGGAGTTAATTGTAAAGAGTTTAAAAAATTGAAAGTCGGCGAGCGAGAGAGCAAAGATCTAATGGCAATGGAACTTGCTAAGAACAAGAATTGGAAAAAATGTCCAAAATGTCGCTTCTACGTGGAAAGAAATGAAGGGTGTACTCGCATTATATGCAGGTGTGGTAATCAATTTTGCTATGGCTGTGGATCCAATTGGAGAACTAACCGACATTATTATTGTCGAACTTAA 849 0.3404 MDNVHERKSSSSSNHKWRLFTSCIPCFTSKHSKKNISEGMEGNSSSTKLEEQILEDIFHDTEENILEGESSSSQLKQLYCAICMEDKYVKEMFENQNCSHSFCKDCVGSYLVAKIQENIANIKCPHPKCKVNLNPQHCTTIIPKDMFERWESTIVENLVLGSQKFYCPFKDCSALLVNDGKEVVTASECPNCHRLFCAQCKVSWHTGVNCKEFKKLKVGERESKDLMAMELAKNKNWKKCPKCRFYVERNEGCTRIICRCGNQFCYGCGSNWRTNRHYYCRT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00840 282 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Trre15g00840 282 Gene3D - 207 282 - -
Trre15g00840 282 SUPERFAMILY RING/U-box 76 157 - -
Trre15g00840 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
Trre15g00840 282 SUPERFAMILY RING/U-box 157 215 - -
Trre15g00840 282 Pfam IBR domain, a half RING-finger domain 229 277 IPR002867 GO:0008270
Trre15g00840 282 Pfam IBR domain, a half RING-finger domain 162 210 IPR002867 GO:0008270
Trre15g00840 282 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 277 IPR031127 GO:0004842|GO:0016567
Trre15g00840 282 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Trre15g00840 282 FunFam RBR-type E3 ubiquitin transferase 75 161 - -
Trre15g00840 282 CDD Rcat_RBR_unk 236 272 - -
Trre15g00840 282 SMART ibrneu5 220 280 IPR002867 GO:0008270
Trre15g00840 282 SMART ibrneu5 148 210 IPR002867 GO:0008270
Trre15g00840 282 CDD BRcat_RBR_unk 161 213 - -
Trre15g00840 282 ProSiteProfiles TRIAD supradomain profile. 76 282 IPR044066 -
Trre15g00840 282 SUPERFAMILY RING/U-box 221 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00840 Trre-Chr15 6213941 6215054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00840 80 270 C3H Transcription Factor Family AT2G19610 27.363 2.50e-20 88.2