Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00839 ATGGATGATAAACCTATTGAAGAAATGTTTGAAAACCGAAATTGTTCACACTCTTTTTGTAAAGATTGTGTTGGAAGTTATCTAGCTGCAAAAATTCAAGAGCATATAGCAATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTATTGATTGTATTGAAATTATACCAAAGAATGTGTTTGAAAGATGGGAAACTGCACTTGTTGAGAATTTGGTGTTGGCTTCACAAAAGTTTTTTTGTCCTTATAATGATTGTTCAGCTATGTTGGTGAATGATTTAAAGGAAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGCGCACAATGTAAAGTTTCATGGCACGCTGGAGTCGATTGTAGAGAGTTTCGAAGCTTGAAATATGGCGATCAGGGGTGGGAATTAGATCTAAGGGCTATTCAACTTGCTAATAAAAAGAAGTGGAAAAAATGTTCAAAATGCAGCTTCTATGTGGGAAGAAGAGGGGGGTGTAATCTCATTACATGCAGGTGTGGGCATAAATTTTGCTATGTGTGTGGATCCAAGTGGAAGCCGTCGCATTATGAATGTATTTGA 597 0.3685 MDDKPIEEMFENRNCSHSFCKDCVGSYLAAKIQEHIAMVKCPDPKCNDILEPIDCIEIIPKNVFERWETALVENLVLASQKFFCPYNDCSAMLVNDLKEVVTVSECPHCHRLFCAQCKVSWHAGVDCREFRSLKYGDQGWELDLRAIQLANKKKWKKCSKCSFYVGRRGGCNLITCRCGHKFCYVCGSKWKPSHYECI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00839 198 CDD BRcat_RBR_unk 78 130 - -
Trre15g00839 198 SMART ibrneu5 138 197 IPR002867 GO:0008270
Trre15g00839 198 SMART ibrneu5 65 127 IPR002867 GO:0008270
Trre15g00839 198 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Trre15g00839 198 SUPERFAMILY RING/U-box 71 131 - -
Trre15g00839 198 SUPERFAMILY RING/U-box 144 195 - -
Trre15g00839 198 Gene3D - 125 198 - -
Trre15g00839 198 SUPERFAMILY RING/U-box 1 74 - -
Trre15g00839 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Trre15g00839 198 Pfam IBR domain, a half RING-finger domain 148 197 IPR002867 GO:0008270
Trre15g00839 198 Pfam IBR domain, a half RING-finger domain 66 127 IPR002867 GO:0008270
Trre15g00839 198 FunFam RBR-type E3 ubiquitin transferase 1 78 - -
Trre15g00839 198 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 190 IPR031127 GO:0004842|GO:0016567
Trre15g00839 198 ProSiteProfiles TRIAD supradomain profile. 1 198 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00839 Trre-Chr15 6203403 6204310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00839 8 188 C3H Transcription Factor Family AT2G19610 29.016 3.01e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00839 K11975 - gmx:100815626 286.574