Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00838 ATGGTAAAATGTCTTGATCCAAAATGCAATGGTATTTTGGATCCTTGTGATTGTATTTCAATTATACCAAAGGATGTGTATGAAAGATGGGAAACTGCACTTGTTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTATAACGGTTTTGAAATGTCCACATTGTCATAGATTTTTTTGCGCACAATGTAAAGTTTCATGGCACGCTGGATTCGATTGTAGAGGGTTTCGAAGCTTGGAAAATGGCAAGCCGTGGTGGGAATCAGATCTACTAGCTGTGCAACTTGCTAAGAAAAATAAATGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGGGAAGGATGTAATCTCATTACATGCAGGTGTGGTCATAAATTTTGCTATGTTTGTGGATCGAATTGGAAGCAGTCGCATTATGAATGTCAAATTTGA 489 0.362 MVKCLDPKCNGILDPCDCISIIPKDVYERWETALVENLVLGSQKFYCPFNDCSAMLVNDGNEVITVLKCPHCHRFFCAQCKVSWHAGFDCRGFRSLENGKPWWESDLLAVQLAKKNKWKRCSKCSFYVERREGCNLITCRCGHKFCYVCGSNWKQSHYECQI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00838 162 CDD BRcat_RBR_unk 41 90 - -
Trre15g00838 162 Pfam IBR domain, a half RING-finger domain 31 90 IPR002867 GO:0008270
Trre15g00838 162 Pfam IBR domain, a half RING-finger domain 109 160 IPR002867 GO:0008270
Trre15g00838 162 ProSiteProfiles TRIAD supradomain profile. 1 162 IPR044066 -
Trre15g00838 162 SUPERFAMILY RING/U-box 104 160 - -
Trre15g00838 162 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 157 IPR031127 GO:0004842|GO:0016567
Trre15g00838 162 CDD Rcat_RBR_unk 117 153 - -
Trre15g00838 162 SUPERFAMILY RING/U-box 33 92 - -
Trre15g00838 162 Gene3D - 89 162 - -
Trre15g00838 162 SMART ibrneu5 100 160 IPR002867 GO:0008270
Trre15g00838 162 SMART ibrneu5 28 90 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00838 Trre-Chr15 6198664 6199594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00838 4 151 C3H Transcription Factor Family AT2G19610 30.625 1.05e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00838 K11975 - gmx:100815626 229.565