Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00837 ATGACAATAATTTCGAAAATAATCAAACAGACTAAGAAAAAGACATGTAATGAGAAAGAAGAGATTGAGAAAGAGAGTGATTCTCAATTGAAACAATTCTATTGTGCAATATGTATGGATGATAAACCTATTGAAGAAATGTTCGAAAACCGAAATTGTCCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTACAAAAATTCAAGAGAATATAGCAATGGTAAAATGTCTTGATCCAAAATGCAATGGTATTTTGGATCCTTGTGATTGTATTTCAATTATACCAAAGGATGTGTATGAAAGATGGGAAACTGCACTTGTTGAGAATTTGGTGTTAGGATCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTATAACGGTTTTGAAATGTCCACATTGTCATAGATTTTTTTGCGCACAATGTAAAGTTTCATGGCACGCTGGATTCGATTGTAGAGGGTTTCGAAGCTTGGAAAATGGCAAGCCGTGGTGGGAATCAGATCTACTAGCTGTGCAACTTGCTAAGAAAAATAAATGGAAAAGATGTTCAAAATGCAGCTTCTATGTGGAAAGAAGGGAAGGATGTAATCTCATTACATGCAGGTGTGGTCATAAATTTTGCTATGTTTGTGGATCGAATTGGAAGCAGTCGCATTATGAATGTCAAATTTGA 714 0.3431 MTIISKIIKQTKKKTCNEKEEIEKESDSQLKQFYCAICMDDKPIEEMFENRNCPHSFCEDCVGSYLATKIQENIAMVKCLDPKCNGILDPCDCISIIPKDVYERWETALVENLVLGSQKFYCPFNDCSAMLVNDGNEVITVLKCPHCHRFFCAQCKVSWHAGFDCRGFRSLENGKPWWESDLLAVQLAKKNKWKRCSKCSFYVERREGCNLITCRCGHKFCYVCGSNWKQSHYECQI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00837 237 ProSiteProfiles TRIAD supradomain profile. 31 237 IPR044066 -
Trre15g00837 237 ProSiteProfiles Zinc finger RING-type profile. 35 79 IPR001841 -
Trre15g00837 237 CDD Rcat_RBR_unk 192 228 - -
Trre15g00837 237 SUPERFAMILY RING/U-box 31 112 - -
Trre15g00837 237 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 232 IPR031127 GO:0004842|GO:0016567
Trre15g00837 237 SUPERFAMILY RING/U-box 179 235 - -
Trre15g00837 237 SUPERFAMILY RING/U-box 108 167 - -
Trre15g00837 237 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Trre15g00837 237 SMART ibrneu5 175 235 IPR002867 GO:0008270
Trre15g00837 237 SMART ibrneu5 103 165 IPR002867 GO:0008270
Trre15g00837 237 Pfam IBR domain, a half RING-finger domain 106 165 IPR002867 GO:0008270
Trre15g00837 237 Pfam IBR domain, a half RING-finger domain 185 235 IPR002867 GO:0008270
Trre15g00837 237 CDD BRcat_RBR_unk 116 165 - -
Trre15g00837 237 FunFam RBR-type E3 ubiquitin transferase 30 116 - -
Trre15g00837 237 Gene3D - 175 237 - -
Trre15g00837 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 115 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00837 Trre-Chr15 6198664 6199819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00837 35 226 C3H Transcription Factor Family AT2G19610 28.641 9.93e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00837 K11975 - gmx:100815626 302.367