Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00835 ATGTGTGGTGGTGCTATTATTTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACTGCTGATATCTTGTGGCCTAATTTGAGGAAAACTGGTTCCAAAAAATCATCATTTTTGCTTGATGATGATTTTGAAGCTGGTTTCAGAGAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGACGATGAAGGGTTGTTGGTCGGTGTCAAAGGTTTTACCTTTGCTGCTTCTAACAACAAATCTTCAAGGAACTTCTCTCGTGGCTCAGCTGGTGCAAAAACTGTGGCATCAAAATCAAACGAGCAACAAGCTGAAAAGGAATCGAAGAGAAAGAGGAAGAATCAATATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTTCGTGTTTGGCTCGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGATGAGGCTCCAAATGCTTCCTCAAAACGTCTGAAGACAAATCCTGATAACCAGATGTTGAACAAAAATCTGAACTCTTTCAAGCCGAACGGAAACAACAAAATGTTCAATTTCGTCGAGAATATGGAGAACTACTATTCTCCTATGGATCAGGTTGAACAGAAACCATTGGTTAACAACCAATATGCTGCTGACATCGGAGCCTTCGCTGGAAACGGAGCTCAGCTTGCACCTGCTGATGTTACTGCTTATTTCAGTTCAGAGCATTCAAGCAATTCGTTTGATTATTCTGATTTATGTTGGGGCGAACAAGGACCGAAAACCCCTGAGATTTCCTCGGTGTTTTCTGCTCCTCTCGAAGCTGAACCTCAGTTGAACATGCAGTCTAACAACTCTCAGGATATGCTACCTATGCAAGCTGAATCTGCAAAGACACTCTCTGAGGAGCTCGCAGATATTGAATCCCAGCTGAAGTACTTCGAGAACTCATTTGATGATAACTGGAGTGATGCTTCACTCGCGTCATTGCTCGGTGCTGATGTAACTCAGGATGCTGGAAACACAATGAACCTTTGGAGCTTTGATGACATGCCTTCCATCGCAGGCGGAGTTTTCTGA 1158 0.4516 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKTGSKKSSFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGVKGFTFAASNNKSSRNFSRGSAGAKTVASKSNEQQAEKESKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEAPNASSKRLKTNPDNQMLNKNLNSFKPNGNNKMFNFVENMENYYSPMDQVEQKPLVNNQYAADIGAFAGNGAQLAPADVTAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAPLEAEPQLNMQSNNSQDMLPMQAESAKTLSEELADIESQLKYFENSFDDNWSDASLASLLGADVTQDAGNTMNLWSFDDMPSIAGGVF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00835 385 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Trre15g00835 385 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Trre15g00835 385 Coils Coil 323 343 - -
Trre15g00835 385 MobiDBLite consensus disorder prediction 89 107 - -
Trre15g00835 385 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Trre15g00835 385 MobiDBLite consensus disorder prediction 89 127 - -
Trre15g00835 385 PANTHER DNA-BINDING DOMAIN 94 289 IPR044808 GO:0003700|GO:0009873
Trre15g00835 385 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Trre15g00835 385 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Trre15g00835 385 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Trre15g00835 385 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Trre15g00835 385 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Trre15g00835 385 MobiDBLite consensus disorder prediction 179 198 - -
Trre15g00835 385 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00835 Trre-Chr15 6157290 6159519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00835 1 385 AP2-EREBP Transcription Factor Family AT3G14230 42.683 2.85e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00835 AP2 2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00835 15 6157290 6159519 Trre15g00835 15 6157290 6159519 ECH