Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00817 ATGGACGACGACGACGAGATCCATTCCAATCCATCACCGTTGAGCGGATCTCCGGTGTCATCACCGGGAGCAATTGGTCGGATTTCGGTTACGGTTGCTGCTCCGGCGCCGGAATCTCATCCGGCGATGAACAGCTATGCATTAGCGCTTCCGATTCAGAATCAGGTAAGAGGAAACAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGGCGCAACGGCGGTTCTGATCGAAGCGTGGGGAGAGAGGTATATGGAATTGAGCAGAGGGAATCTGAAGCAAAAGCATTGGAAAGAGGTGGCGGAGATCGTTAACGGAAGAGAAGATTATATGAAAACGCCGAAAACCGATGTTCAGTGCAAAAATCGGATCGATACAGTTAAGAAGAAGTATAAATCGGAGAAAGCTAAGATCGCCGCCGAAGGCGGCATCGCAGCCAGTAAATGGCCGTTTTATGACCGATTAGATCAACTGATCGGTCCAACCGCTAAGATCGCCGGTAGCACATCTGCCGGAAACAGTAATTTACCACCGCAGAAAGTTCCGTTAGGAATTCCGGTCGGCCTTCGTACCGGTGGTGGTGCCAATCAGTTTAATTCTCAAAAGAAAACTCAAAAACCACAGCCACAGCCACAGCCACAACCACAGCCGCAGTTGAATTATCAGAAAGTTCAGCTTCGGCCGCGAGTTCAGGCTATGGATTCCGATAATTCATCGGAAAGAGGAGCATTGTCCCCGGTGTCAAGCGACAGTTTACCACCGCCGGATAGTCAGGAGAGGAAGCGAGCGAAGGTGATGAATTCGAATGCTGCGAAAGGAACGGAAGGAAGAAAGAAAGGTTGGGGAAGTGCTGTGAGGGAATTGACTCAAGCAATTGTGAAATTTGGGGAGGCTTATGAACAAGCGGAGACATCGAAGTTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAGAGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACACAGGTAGAGATTTCACAGCTTAAGCTTGGAAGAAAAAATGTTAATGTTAATGGCATTGAAGATCGCTTAACACAATCCAAGATCATCCACTTTCATTGTTCCTCTTTGCATTGGATCGTTTCACATTCAAAAATTTTTGCTGATTATGATTGGTTTTGTTCAAAAAGGATGATGAAAGTTCAAATGATCTGA 1197 0.4712 MDDDDEIHSNPSPLSGSPVSSPGAIGRISVTVAAPAPESHPAMNSYALALPIQNQVRGNNGGGREDCWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVNGREDYMKTPKTDVQCKNRIDTVKKKYKSEKAKIAAEGGIAASKWPFYDRLDQLIGPTAKIAGSTSAGNSNLPPQKVPLGIPVGLRTGGGANQFNSQKKTQKPQPQPQPQPQPQLNYQKVQLRPRVQAMDSDNSSERGALSPVSSDSLPPPDSQERKRAKVMNSNAAKGTEGRKKGWGSAVRELTQAIVKFGEAYEQAETSKLQQVVEMEKQRMKFARDLELQRMQFFMKTQVEISQLKLGRKNVNVNGIEDRLTQSKIIHFHCSSLHWIVSHSKIFADYDWFCSKRMMKVQMI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00817 398 FunFam trihelix transcription factor ASIL2 68 133 - -
Trre15g00817 398 Gene3D - 68 133 - -
Trre15g00817 398 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 42 344 IPR044823 -
Trre15g00817 398 MobiDBLite consensus disorder prediction 193 207 - -
Trre15g00817 398 MobiDBLite consensus disorder prediction 10 24 - -
Trre15g00817 398 MobiDBLite consensus disorder prediction 217 254 - -
Trre15g00817 398 MobiDBLite consensus disorder prediction 167 282 - -
Trre15g00817 398 Pfam Myb/SANT-like DNA-binding domain 65 158 IPR044822 -
Trre15g00817 398 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00817 Trre-Chr15 6033103 6039164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00817 1 343 Trihelix Transcription Factor Family AT3G14180 46.318 1.97e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre15g00817 Myb_DNA-bind_4 1.5e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00817 - - cam:101508093 449.129