Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00813 ATGGCGACCAAAGAAGATTCACAAAAGGAGTTGCACAAAATAGTCATCGAAAGTGAAGGATCAAACCCAAATTCGGAATTTGACGATTCAGAAGAAGATCCTAATTACGACATGCTCGAAGAAACCCATCGTAGCTTCTCCAATCTTTCACTCAGGAGGAACAAGGCAAAAAAGCGCATAGTTGAAGATAAGTGTATGGATACTGCGATCAACTCAGAAGTGTTGGAGATGAATACACCTTCTATTGATGGTGATAGTTTTGAAAAAGTTCAGAAAATAATAAAGGCTGGACTGCTAGAGAAATTAAAAGTGGATGAATGCAAGATTTATTTGAAGAAGAATGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAGTATCCGCCTCATAGATTTGTGTTGAATTGTAAAGGTGATGCATGTACTGGTGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCTTCCAGGAGTGGCGGCGGTCCACCGTGTGGCAAAAGGACTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAAAAACCTCTCCCTCCCCTTCACCCCCTACTGATAAAGGGTAGAAACCTTTATCGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGCAAAGACAAAAACTATTAATGGAAAAGCACTCTAGGGGATCCATTGCTAGGGCAGATAGGGAAGCAAGGATACTGGAAAAGGAGATGAGAAAATCAATGAAGGAAAATAGGATCTCAAAAAAGGATTCAGCACAAAACCAATGTCAATCACATTCATCCGTTGCAAGGCCTCATAATCAACCTCAACCTCAAGAAACAACATCTGGAATCATAAATAAACCAGCAGCTGTAACTAAACAGCACGTCCAGTCTATTGATTCTCGAGCTATCACAATGGGATCTGACAAGTTCAGAAATTCAGAAAAATCGTCTTTTAATGCAAACCACTATTATGCTGATTATTACAGTTACAGAGACAAACCAACTACTGTTGAGAAATACCATCCTTCCATCGTTGAGACAAACAGTTTTGCTGACAGAACTTGTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCGTTTCGCAAATACAAATCACGTGCATACAGTGATCCAAAACAGAGAAAGCTATCAGCAAAAACAGTTTTGTAGACATTTTGCCCGTGGAAGATGCCATTTTGGAGATAACTGCAAATTCTTACATGGTGGGAGAGACTAA 1353 0.4035 MATKEDSQKELHKIVIESEGSNPNSEFDDSEEDPNYDMLEETHRSFSNLSLRRNKAKKRIVEDKCMDTAINSEVLEMNTPSIDGDSFEKVQKIIKAGLLEKLKVDECKIYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHRFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRTVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGQRQKLLMEKHSRGSIARADREARILEKEMRKSMKENRISKKDSAQNQCQSHSSVARPHNQPQPQETTSGIINKPAAVTKQHVQSIDSRAITMGSDKFRNSEKSSFNANHYYADYYSYRDKPTTVEKYHPSIVETNSFADRTCYPRKPLSSANHFVPRFANTNHVHTVIQNRESYQQKQFCRHFARGRCHFGDNCKFLHGGRD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00813 450 PANTHER SAP DOMAIN-CONTAINING PROTEIN 12 342 - -
Trre15g00813 450 MobiDBLite consensus disorder prediction 290 321 - -
Trre15g00813 450 ProSiteProfiles SAP motif profile. 99 133 IPR003034 -
Trre15g00813 450 Coils Coil 263 283 - -
Trre15g00813 450 Gene3D SAP domain 89 145 IPR036361 -
Trre15g00813 450 SUPERFAMILY SAP domain 88 133 IPR036361 -
Trre15g00813 450 Gene3D - 411 450 - -
Trre15g00813 450 MobiDBLite consensus disorder prediction 280 321 - -
Trre15g00813 450 SUPERFAMILY CCCH zinc finger 423 447 IPR036855 GO:0046872
Trre15g00813 450 SMART c3hfinal6 423 448 IPR000571 GO:0046872
Trre15g00813 450 MobiDBLite consensus disorder prediction 1 16 - -
Trre15g00813 450 Pfam CCCH-type zinc finger 428 447 IPR041367 -
Trre15g00813 450 ProSiteProfiles Zinc finger C3H1-type profile. 422 449 IPR000571 GO:0046872
Trre15g00813 450 MobiDBLite consensus disorder prediction 1 35 - -
Trre15g00813 450 Pfam SAP domain 99 132 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00813 Trre-Chr15 5998430 6001591 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g00813 SAP 1.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00813 - - gmx:100815642 520.39