Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00808 ATGCTGTCCTTTTTCTCATACAGATTGAAGTTGAAGACTTTGAGACAGAAATGGGATGATGAAGGGCAAAGGCAAAAACTGTTGATGGAAAAACACTCCCGGGGATCTGTTGCTAGGGCAGATAGGGAAGCAAGGATACAGGAAAAGGAGATGAGAAAATCAATGAAAGAAAATAGGATCTCAAAAAAGGATTCAGCAAAGAACCAATGTCAATCACATTCATCCATTATAAGGCCACAAATTCAACCTCAAGAAACAACAAATGTACTCATTACACTACCATCTGCAATTGTAAATAAACCAGCAGCTGTAACTGAACAGCATGTTCGATCTATAGATTCTCGAGCTCTCACAATGGGATCCGACCAGTTCAAATCGTCTTTTAATTCAAACCACTATTATGCTGACTACAGTTATAGAGACAAACCAAACACTGTTGAGAGATACCATCCTTCCATTGTTGAGACAAACAATTTTGCTGAGAGAACTTCTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCGTTTTACAAATGCAAATCACATGCATACAGTGATCCCAAACCGAGAACACTATCAGCAAAAACAGTTTTGCAGACATTTTGCCCGTGGAAGATGCCATTTTGGAGATAACTGCAAATTCTTACATGGTGGGAGAGACTGA 675 0.3941 MLSFFSYRLKLKTLRQKWDDEGQRQKLLMEKHSRGSVARADREARIQEKEMRKSMKENRISKKDSAKNQCQSHSSIIRPQIQPQETTNVLITLPSAIVNKPAAVTEQHVRSIDSRALTMGSDQFKSSFNSNHYYADYSYRDKPNTVERYHPSIVETNNFAERTSYPRKPLSSANHFVPRFTNANHMHTVIPNREHYQQKQFCRHFARGRCHFGDNCKFLHGGRD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00808 224 ProSiteProfiles Zinc finger C3H1-type profile. 196 223 IPR000571 GO:0046872
Trre15g00808 224 SUPERFAMILY CCCH zinc finger 196 221 IPR036855 GO:0046872
Trre15g00808 224 MobiDBLite consensus disorder prediction 50 74 - -
Trre15g00808 224 SMART c3hfinal6 197 222 IPR000571 GO:0046872
Trre15g00808 224 Coils Coil 37 57 - -
Trre15g00808 224 Pfam CCCH-type zinc finger 202 221 IPR041367 -
Trre15g00808 224 Gene3D - 186 224 - -
Trre15g00808 224 MobiDBLite consensus disorder prediction 50 66 - -
Trre15g00808 224 PANTHER SAP DOMAIN-CONTAINING PROTEIN 10 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00808 Trre-Chr15 5963299 5964253 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g00808 zf-CCCH_4 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00808 - - gmx:100815642 191.43