Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00807 ATGTCCATAGGAGAATTGGTTATGCTACCAACAGACCCTAGTACGGTGATCCCACCTGTGGAGGTGAAACAACTGCCTGCAATTGTGACGTTGTTTCTTCTTGTTGTTGTTGTTGTTGCTGTAATTGCTGCTGCAACTTCTGTTGTATATGCTGTCCTTTTTCTCATACAGATTGAAGTGCTCTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTCACCCCCTACTAATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGATGATGAAGGGCAAAGGCAAAAACTGTTGATGGAAAAACACTCCCGGGGATCTGTTGCTAGGGCAGATAGGGAAGCAAGGATACAGGAAAAGGAGATGAGAAAATCAATGAAAGAAAATAGGATCTCAAAAAAGGATTCAGCAAAGAACCAATGTCAATCACATTCATCCATTATAAGGCCACAAATTCAACCTCAAGAAACAACAAATGTACTCATTACACTACCATCTGCAATTGTAAATAAACCAGCAGCTGTAACTGAACAGCATGTTCGATCTATAGATTCTCGAGCTCTCACAATGGGATCCGACCAGTTCAAATCGTCTTTTAATTCAAACCACTATTATGCTGACTACAGTTATAGAGACAAACCAAACACTGTTGAGAGATACCATCCTTCCATTGTTGAGACAAACAATTTTGCTGAGAGAACTTCTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCGTTTTACAAATGCAAATCACATGCATACAGTGATCCCAAACCGAGAACACTATCAGCAAAAACAGTTTTGCAGACATTTTGCCCGTGGAAGATGCCATTTTGGAGATAACTGCAAATTCTTACATGGTGGGAGAGACTGA 897 0.4114 MSIGELVMLPTDPSTVIPPVEVKQLPAIVTLFLLVVVVVAVIAAATSVVYAVLFLIQIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWDDEGQRQKLLMEKHSRGSVARADREARIQEKEMRKSMKENRISKKDSAKNQCQSHSSIIRPQIQPQETTNVLITLPSAIVNKPAAVTEQHVRSIDSRALTMGSDQFKSSFNSNHYYADYSYRDKPNTVERYHPSIVETNNFAERTSYPRKPLSSANHFVPRFTNANHMHTVIPNREHYQQKQFCRHFARGRCHFGDNCKFLHGGRD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00807 298 Coils Coil 111 131 - -
Trre15g00807 298 SUPERFAMILY CCCH zinc finger 270 295 IPR036855 GO:0046872
Trre15g00807 298 SMART c3hfinal6 271 296 IPR000571 GO:0046872
Trre15g00807 298 Gene3D - 260 298 - -
Trre15g00807 298 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Trre15g00807 298 MobiDBLite consensus disorder prediction 124 140 - -
Trre15g00807 298 PANTHER SAP DOMAIN-CONTAINING PROTEIN 58 151 - -
Trre15g00807 298 Pfam CCCH-type zinc finger 276 295 IPR041367 -
Trre15g00807 298 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00807 Trre-Chr15 5962979 5964253 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g00807 zf-CCCH_4 3.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00807 - - gmx:100815642 235.343