Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00803 ATGGCTAATTTGTGGTGTGCTATCTTCACAATCTTTGCCTTACTGATTCCCATCTCATTCATATCGAATGTCATGGCTAGATTTATTTATCTAGGTTGCATAGTTGCACTAACAGTGTTGTATTTTGGTATAAAGTTGTACAGAGCAGAGACAGTAGCAGAAAATGATGCAGAGGATTTCCAGTTACCAGAATTATACTTAAGAAGAGGAGAGTTTGAATCTAGGAGGAGGTCGCATCGAACAAATTCAGAAATGTGTTTTGAGACAAGGGCAGAGATTGCTAATTGGGCAATAAGATCACTGCCCCCTGTTAAGAGATTTGAGTGCTGTCAAGAAGATATTATTATGCATTGTCCTATTTGCATGGAAGAATTTAAGAGAGGAAGCTTAATTCAATCTTTTGGAGTCTGCGCTCATGAATTTCATACTGCTTGTCTCAATTCTTGGTTGCAGAGAGGAAAATCTACTTGCCCTGTTTGTCGCTTAGATTTGTTTGTCTAA 501 0.3812 MANLWCAIFTIFALLIPISFISNVMARFIYLGCIVALTVLYFGIKLYRAETVAENDAEDFQLPELYLRRGEFESRRRSHRTNSEMCFETRAEIANWAIRSLPPVKRFECCQEDIIMHCPICMEEFKRGSLIQSFGVCAHEFHTACLNSWLQRGKSTCPVCRLDLFV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00803 166 ProSiteProfiles Zinc finger RING-type profile. 118 161 IPR001841 -
Trre15g00803 166 SMART ring_2 118 160 IPR001841 -
Trre15g00803 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 164 IPR013083 -
Trre15g00803 166 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 162 IPR044675 -
Trre15g00803 166 SUPERFAMILY RING/U-box 98 164 - -
Trre15g00803 166 Pfam Ring finger domain 117 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00803 Trre-Chr15 5929418 5929918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00803 66 166 C3H Transcription Factor Family AT1G76410 31.373 5.33e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00803 - K16281 tpra:123914815 114.39