Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00794 ATGCAGAATCACAGGCTCAAGCAACAGCAGCAGCAGCAACAACAAGTTCTGATGCAACAAGCTTTGATTCAACAGCAATCTCTTTATCATCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGTAATGTCCATACACAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCTGCCAATGGTCCAGTTGAAGGGTGTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGGTTTATTCATTACTTCGACCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGGAGGCATCTATTTGGACAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACTCTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGTCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGAGGCATGGAAGAGAAGCAAACCTCATCAGACAACAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGATGGTAAAGAGACATCTAACAATGATGCTCCTGAGAACAATCCTCAATATACAACTGTTTATGTGGGCAACCTTGGTTCAGAGGCAACACAACTTGATCTCCATCGCCATTTCCATGCTCTTGGGGCTGGTGCGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGTTTCGTGAGATATAGCACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATACTCAGTCTTACCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTCTACCTCTGCCAGGTCTGTCCACAAACGATATTTTGGCGTACGAACGGCAGCTAGCAATGAGCAAGATGGGTGGTGTTCATGCTGCGATGATGCATCCTCAAGCGCAACATCCTCTCAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATATGATGGCGGGTTCCAAAACATTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1272 0.4607 MQNHRLKQQQQQQQQVLMQQALIQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAANGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGMEEKQTSSDNKSVVELTNGSSEDGKETSNNDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGAIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSYLCGKQIKCSWGSKPTPPGTASNPLPPPAALPLPGLSTNDILAYERQLAMSKMGGVHAAMMHPQAQHPLKQAAIGASQAIYDGGFQNIAAAQQMMYYQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00794 423 SMART rrm1_1 143 216 IPR000504 GO:0003723
Trre15g00794 423 SMART rrm1_1 58 127 IPR000504 GO:0003723
Trre15g00794 423 SMART rrm1_1 265 335 IPR000504 GO:0003723
Trre15g00794 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 339 IPR000504 GO:0003723
Trre15g00794 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Trre15g00794 423 MobiDBLite consensus disorder prediction 225 263 - -
Trre15g00794 423 CDD RRM2_PUB1 141 220 - -
Trre15g00794 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 342 - -
Trre15g00794 423 FunFam Oligouridylate-binding protein 1C 241 343 - -
Trre15g00794 423 FunFam oligouridylate-binding protein 1B-like isoform X2 1 139 - -
Trre15g00794 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Trre15g00794 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Trre15g00794 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 332 IPR000504 GO:0003723
Trre15g00794 423 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Trre15g00794 423 Gene3D - 1 140 IPR012677 -
Trre15g00794 423 Gene3D - 241 343 IPR012677 -
Trre15g00794 423 Coils Coil 419 423 - -
Trre15g00794 423 FunFam oligouridylate-binding protein 1-like isoform X2 140 236 - -
Trre15g00794 423 MobiDBLite consensus disorder prediction 221 263 - -
Trre15g00794 423 Gene3D - 141 221 IPR012677 -
Trre15g00794 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Trre15g00794 423 SUPERFAMILY RNA-binding domain, RBD 254 346 IPR035979 GO:0003676
Trre15g00794 423 SUPERFAMILY RNA-binding domain, RBD 136 229 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00794 Trre-Chr15 5878528 5883301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00794 58 326 Eukaryotic Initiation Factors Gene Family AT1G49760 26.259 6.03e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00794 K13201 - gmx:100781227 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00794 15 5878528 5883301 Trre15g00794 15 5878528 5883301 ECH