Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00792 ATGTCTACTTTCCCAAATACTGTGTCAGATGGCCGGAGAGTCGCCGGAAAAGCACCGGAGAAGTTTAAATTTTCACAGACTTGTAGCCTCTTGAGTCAATTGTTGAAGGAAAAGAGAATTTCCGGTGATTCTGCTTCTGGATTGTTTGGAAAAATGGAACCTAAAGCAAGCACAAAGGATTTGTTAGGGAGTATGCAAAATTCAGATGGGGGTTTGAGACTAAATGCATCAACTATTGATTCTCTTCCTCAGTTTGTGGAAAATCCTTGCATTAAGAAGTCTAATATTAGATCAACGGCACCAGAAACACCTCAATTGACCTTATTCTATGCCGGAAAATTGTTAGTATTCGATGCTTTTTCACCTGCGAAAGCAACCGAGATCATGGAATTGGCCACCAAGTTAGCCTCTGAAATTCCAAGCACTGAAGAAAATCCACCAAGTGCACCTATTGCTAGTGAAAAATCAAAGGAGTCGAAAGTTCCTCAAACAAACACTGCCTTAGAAACACCTAAACAAGGAAACAAAACCAATTGTTCAGATATGAGATATCCAAGAAGAGCTTCACTTCTTAAGTTCCTTGAGAAAAGAAAAGAAAGGGTTGTTGCTAGAGGACCTTACCAAATAAACAATCACAAAAATGAGGGTAGTAGTTCAGGAAGTGAACCTAAAGATCAACAATGTTCTGAACACTTTGACCTTAACTTATAG 711 0.391 MSTFPNTVSDGRRVAGKAPEKFKFSQTCSLLSQLLKEKRISGDSASGLFGKMEPKASTKDLLGSMQNSDGGLRLNASTIDSLPQFVENPCIKKSNIRSTAPETPQLTLFYAGKLLVFDAFSPAKATEIMELATKLASEIPSTEENPPSAPIASEKSKESKVPQTNTALETPKQGNKTNCSDMRYPRRASLLKFLEKRKERVVARGPYQINNHKNEGSSSGSEPKDQQCSEHFDLNL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00792 236 Pfam tify domain 101 132 IPR010399 -
Trre15g00792 236 MobiDBLite consensus disorder prediction 210 236 - -
Trre15g00792 236 MobiDBLite consensus disorder prediction 139 183 - -
Trre15g00792 236 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 218 IPR040390 -
Trre15g00792 236 SMART tify_2 99 134 IPR010399 -
Trre15g00792 236 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Trre15g00792 236 MobiDBLite consensus disorder prediction 157 182 - -
Trre15g00792 236 MobiDBLite consensus disorder prediction 202 236 - -
Trre15g00792 236 Pfam Jas motif 186 208 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00792 Trre-Chr15 5864743 5866612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00792 12 209 Tify Gene Family AT1G19180 34.222 4.04e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre15g00792 tify 5.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00792 K13464 - gmx:100815478 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00792 15 5864743 5866612 Trre15g00792 15 5864743 5866612 ECH