Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00766 ATGGAAGAAGATGATGATTATGAGGAGTATGTGCCTGTGGCGAAACGTCGTGCTATGGAAGCTCAGAAAATTCTCCAACGAAAAGGGAAGGCATCTGCTGCAATCGACGATGATTCTGAAAAACTAAGAGTGGTTGAAAGTAAGCCAAGTCTTCTTGTTAAAGCATCACAGTTAAAAAAAGATCAACCTGAGGTAAGCATCACAGAACAGATCATTCAACAAGAGAAGGAGATGATTGAGAGTTTACCGGATAACAAAACTCTTAAGTCTGTTCGAGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCCTACAGGGTGGAAACCTCCTTTGTATATAAGAAGGATGTCGAAGAAAGATTGCGAATTAATGCGAAAACAGTGGCACATAATAGTTGATGGTGAAGAAATTCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCTATTTTGAAGATGTTGAAAACCAAAGGTAAAACTTTGGTCTTTGTGCTTCCGATGATAATGATGGCAATGCAGGAGGAAACTATGATGCCTATAGTTCCTGGGGAAGGTCCGTTTGGTTTGATTATTTGTCCATCGAGGGAACTTGCTAGGCAAACATATGAAGTCATTGAACAATTCTTGTTACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATTGATATGAGATCACAACTTGAGATTGTGAAGAAGGGGGTTCATATAGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGACGAGGCTGATCGGTTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTCTTATTTTCTGCTACTATGCCGACAAAAATTCAGAACTTTGCTAGAAGTGCTTTAGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGAGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCGAAAATAGTTTACCTCCTTGAGTGCCTTCAGAAAACCCCTCCCCCTGTTCTGATATTTTGTGAGAATAAGGCTGATGTGGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTAGAAGCCGTGGCTATTCACGGAGGGAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAAGGTTTAGATTTTCCTGATATTCAGCACGTGATCAACTATGACATGCCGGCTGAAATAGAAAATTATGTTCATAGGATTGGACGTACTGGAAGATGTGGCAAGACTGGTATAGCGACAACATTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACATCTTTTGCAAGAAGCAAAGCAAAGGATCCCCCCAGTTTTGGCTGAGCTTAATGATCCAATGGAAGATAATAATGACATCACAGACATAAGTGGTGTCAAGGGATGTGCATACTGTGGAGGGCTTGGTCATCGTATCGGTGATTGTCCCAAATTAGAACACCAGAAGAGTGTGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCCGGAGGTTACAGAGGGGAAATTTGA 1677 0.4049 MEEDDDYEEYVPVAKRRAMEAQKILQRKGKASAAIDDDSEKLRVVESKPSLLVKASQLKKDQPEVSITEQIIQQEKEMIESLPDNKTLKSVRELAKGITYTEPLPTGWKPPLYIRRMSKKDCELMRKQWHIIVDGEEIPPPIKNFKDMRFPDPILKMLKTKGKTLVFVLPMIMMAMQEETMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNNDITDISGVKGCAYCGGLGHRIGDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00766 558 Pfam DEAD/DEAH box helicase 161 316 IPR011545 GO:0003676|GO:0005524
Trre15g00766 558 Pfam Helicase conserved C-terminal domain 352 459 IPR001650 -
Trre15g00766 558 Gene3D - 338 500 IPR027417 -
Trre15g00766 558 Coils Coil 470 490 - -
Trre15g00766 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Trre15g00766 558 FunFam Probable ATP-dependent RNA helicase DDX41 338 500 - -
Trre15g00766 558 SMART ultradead3 147 343 IPR014001 -
Trre15g00766 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 328 IPR014001 -
Trre15g00766 558 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 499 - -
Trre15g00766 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 474 IPR027417 -
Trre15g00766 558 SMART helicmild6 378 459 IPR001650 -
Trre15g00766 558 CDD SF2_C_DEAD 340 468 - -
Trre15g00766 558 Gene3D - 112 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00766 Trre-Chr15 5664499 5666265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00766 192 498 Eukaryotic Initiation Factors Gene Family AT1G72730 31.613 1.03e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00766 K13116 - gmx:100814127 1017.68