Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00761 ATGAGATCTCATAATTCGATAAGTAAAAGAAGACGAAACAAAACTTTACCAGTCGGGGAACCTTCACAAGGGGGGAGACCAACCGAGAGACTACAAGTTCCCATGGTTGATTTTGCTGAAAATGATGACAATGTCATCGAAATTTCATCAAGTGCTTTTGTTGAGGCTGCAGCAAATGTGAGGAGAATTCGTAGAAGTATGGACTATATCCAACAAATTGATGGTGTTTATATCAATTTGGAAGAAGACACTAGTGAAGTGATTGAAAATGCCACAAAGGCACCTGAATCTCCAAAAGAGCCTAGCATAATATGCCCAATATGCATGGGTCCTTCTGTTGAGGAAACGACAACAAGATGTGGCCATATATTTTGCAAAAACTGCATCAAATCTGCATTAACTGCACGTCGTATATGCCCTGTGTGCGGAGTAAAGGCTACTATGAGGGGCCTAGTTAGGGTGTATCTTCCATCTCTACTTGAAGAATCATCCAGTGATGGTGAGGAAAATTGA 513 0.4094 MRSHNSISKRRRNKTLPVGEPSQGGRPTERLQVPMVDFAENDDNVIEISSSAFVEAAANVRRIRRSMDYIQQIDGVYINLEEDTSEVIENATKAPESPKEPSIICPICMGPSVEETTTRCGHIFCKNCIKSALTARRICPVCGVKATMRGLVRVYLPSLLEESSSDGEEN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00761 170 PANTHER ELFLESS, ISOFORM B 74 157 - -
Trre15g00761 170 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
Trre15g00761 170 ProSiteProfiles Zinc finger RING-type profile. 105 142 IPR001841 -
Trre15g00761 170 Pfam Zinc finger, C3HC4 type (RING finger) 105 142 - -
Trre15g00761 170 SMART ring_2 105 142 IPR001841 -
Trre15g00761 170 SUPERFAMILY RING/U-box 104 147 - -
Trre15g00761 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 169 IPR013083 -
Trre15g00761 170 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00761 Trre-Chr15 5637167 5640844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00761 40 158 C3H Transcription Factor Family AT3G07200 36.029 1.14e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00761 K22651 - tpra:123891564 166.007