Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00734 ATGATGAGTGCAAGTTCAAGAAATAGGTCACCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATTTACTCTATCAAGAGAAGTTTAGATACTTCAATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACAATTAGTAGTTTCTTCTGCAAACACAACCTCTCTAACATCATCATCAACATCTTCTACTTATACTAACAGAAACATCTCCTTGAACAACAGTAGCAGCTTAACTTCTTCTTTTCCTTTTTCTACTTCTATGACTTGTCATGATCAGTCACAACAACAACAACAACAATCCTTTTCACAATCTTACCAAAACTCTTCTCAAAACCCTTACTTTTACTCTCAACAATCTACCTCTTCTAAACCCCTTGATCATTCTGATTTTCATACTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCCTCTTATTCTCATGATGATAAAGACTATAGGAGGCAAGTTCATGGAATAAAGGATGGTGTGGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCAATATGGTTCATATAATCAACAACTACCAGTGAATCCTTTTAAGTCATATTCAAGTTCACAACAATATCAGAACATTAATGATAACACAAGACAGCAAGAACATCAGCAACAAGAACAACACTGTTTTGTTTTAGGCACTGACTTCAAATCAACTAGACCAACAAACAAAGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACTGATTCTTGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACAGGTTTATGA 1062 0.3776 MMSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQLVVSSANTTSLTSSSTSSTYTNRNISLNNSSSLTSSFPFSTSMTCHDQSQQQQQQSFSQSYQNSSQNPYFYSQQSTSSKPLDHSDFHTQDATTHHLFLDSSSYSHDDKDYRRQVHGIKDGVDERTFFPEATGSSRSYQYGSYNQQLPVNPFKSYSSSQQYQNINDNTRQQEHQQQEQHCFVLGTDFKSTRPTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTGL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00734 353 PANTHER GROWTH-REGULATING FACTOR 5 10 339 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre15g00734 353 MobiDBLite consensus disorder prediction 309 324 - -
Trre15g00734 353 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00734 353 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre15g00734 353 MobiDBLite consensus disorder prediction 306 325 - -
Trre15g00734 353 MobiDBLite consensus disorder prediction 161 202 - -
Trre15g00734 353 MobiDBLite consensus disorder prediction 161 207 - -
Trre15g00734 353 MobiDBLite consensus disorder prediction 103 147 - -
Trre15g00734 353 Pfam WRC 77 119 IPR014977 -
Trre15g00734 353 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00734 353 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00734 353 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00734 Trre-Chr15 5427403 5429128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00734 3 331 GRF Transcription Factor Family AT3G13960 41.129 6.61e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre15g00734 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00734 - - aprc:113851425 450.669