Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00733 ATGATGAGTGCAAGTTCAAGAAATAGGTCACCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATTTACTCTATCAAGAGAAGTTTAGATACTTCAATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACAATTAGTAGTTTCTTCTGCAAACACAACCTCTCTAACATCATCATCAACATCTTCTACTTATACTAACAGAAACATCTCCTTGAACAACAGTAGCAGCTTAACTTCTTCTTTTCCTTTTTCTACTTCTATGACTTGTCATGATCAGTCACAACAACAACAACAACAATCCTTTTCACAATCTTACCAAAACTCTTCTCAAAACCCTTACTTTTACTCTCAACAATCTACCTCTTCTAAACCCCTTGATCATTCTGATTTTCATACTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCCTCTTATTCTCATGATGATAAAGACTATAGGCAAGTTCATGGAATAAAGGATGGTGTGGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCAATATGGTTCATATAATCAACAACTACCAGTGAATCCTTTTAAGTCATATTCAAGTTCACAACAATATCAGAACATTAATGATAACACAAGACAGCAAGAACATCAGCAACAAGAACAACACTGTTTTGTTTTAGGCACTGACTTCAAATCAACTAGACCAACAAACAAAGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACTGATTCTTGGTTAGATCTTGCTTCCAACTCCAGAATCCCAACAGGTTTATGA 1059 0.3768 MMSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQLVVSSANTTSLTSSSTSSTYTNRNISLNNSSSLTSSFPFSTSMTCHDQSQQQQQQSFSQSYQNSSQNPYFYSQQSTSSKPLDHSDFHTQDATTHHLFLDSSSYSHDDKDYRQVHGIKDGVDERTFFPEATGSSRSYQYGSYNQQLPVNPFKSYSSSQQYQNINDNTRQQEHQQQEQHCFVLGTDFKSTRPTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTGL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00733 352 MobiDBLite consensus disorder prediction 305 324 - -
Trre15g00733 352 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00733 352 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre15g00733 352 MobiDBLite consensus disorder prediction 162 207 - -
Trre15g00733 352 MobiDBLite consensus disorder prediction 103 147 - -
Trre15g00733 352 MobiDBLite consensus disorder prediction 308 323 - -
Trre15g00733 352 Pfam WRC 77 119 IPR014977 -
Trre15g00733 352 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00733 352 MobiDBLite consensus disorder prediction 162 202 - -
Trre15g00733 352 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g00733 352 MobiDBLite consensus disorder prediction 118 147 - -
Trre15g00733 352 PANTHER GROWTH-REGULATING FACTOR 5 10 338 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00733 Trre-Chr15 5427403 5429128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00733 3 330 GRF Transcription Factor Family AT3G13960 41.398 2.30e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre15g00733 WRC 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00733 - - aprc:113851425 451.825